CN186415

Overview
NameCN186415
Unique NameCN186415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_STAMF (30S ribosomal protein S4P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 68/157 (43.31%), Postives = 101/157 (64.33%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG--EALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591
            K ++ PR  + KE L  EL+L+G YGLR KRELWR Q  + + R+ AR LL      P+ I E   +ALL R++R G + E  + L+ VL LTVE+ LERRLQT+V+K G+A++I+HAR LI   HI +  + +  P ++V  + +  ++++ TSPF
Sbjct:    9 KKWEGPRHPWRKEVLVQELKLLGTYGLRNKRELWRAQTIVRKFRHQARSLLAA----PQEIREQAEKALLNRLYRLGLLHENAS-LEDVLGLTVEDLLERRLQTIVYKKGLARTIYHARQLIIHGHIAIAGRRITSPGYIVSREEEDLVDYAPTSPF 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METKA (30S ribosomal protein S4P OS=Methanopyrus kandleri GN=rps4p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 63/156 (40.38%), Postives = 104/156 (66.67%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNK--LDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            K ++ PR  +E ERL+ E +L+ +YGLR K+ELWR Q  L R R  A++L+   +   +R  E EAL R+++  G ++++  +  LD +L LTVE+ LERRLQT+V++ G+AK+   AR L+  RHI +G ++V +PS++V  + ++ +++S  SP
Sbjct:    9 KKYETPRHPWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKELMARTDPEAQR--EREALFRKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQLVVHRHIAIGDRIVTVPSYLVSREEEEEVDYSPYSP 162          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS9_ENCCU (40S ribosomal protein S9 OS=Encephalitozoon cuniculi GN=RPS9 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 74/173 (42.77%), Postives = 105/173 (60.69%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFV--------EERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF*GGRPGRVK 618
            K    PR  +EKERL  E +LVG YGL+ K ELW ++   ++ +  AR LLT    NP  I   G +LLRR+ +YG +        +E  N L+ VL LT+ ++LERRLQ  VF +G+AKS+HHAR+LI  R I +  Q+V++P F+VR D +  IE++  S +  G  G+ K
Sbjct:    8 KRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRY--GDKGKKK 176          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_HYPBU (30S ribosomal protein S4P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25
Identity = 65/155 (41.94%), Postives = 97/155 (62.58%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591
            K +  P+  + KERL  EL LVG YGLR KRELW+++      R+ AR LL L  +   +  E +ALL R++  G + E    LD VL LT E+FLERRLQT+V+K G+A++I+ AR LI   HI +  + +  P ++V+ D +  ++++ TSP+
Sbjct:    9 KKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPPEVREK--EEKALLARLNELGVLPENAT-LDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPY 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METJA (30S ribosomal protein S4P OS=Methanocaldococcus jannaschii GN=rps4p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 62/159 (38.99%), Postives = 96/159 (60.38%), Query Frame = 1
Query:  115 RNYGKTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591
            R + KT++ P   + KER++ E  L  +YGLR KRE+W+ +  L + R  AR L++  ++  +   E   L   + +YG ++     LD VL+LTVE+ LERRLQTLVF+ G+A++   AR LI   HI V  ++V  PS++V V+ +  I ++  SPF
Sbjct:    6 RRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPF 162          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_THEAC (30S ribosomal protein S4P OS=Thermoplasma acidophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 64/157 (40.76%), Postives = 97/157 (61.78%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            K +  PR  +EKER+D E ++V +YGL+ K+E+WR +  LS IR+ ARDL   L  ++ N ++  + E +++R++RY  + E    LD VL+LTVEN L+RRLQT+VF+  +A S+  AR LI   HI V  + V +P  +V    +  I +   SP
Sbjct:    9 KKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARLRTNDVNAQK--QLERMIKRLNRYKLLSENAT-LDDVLSLTVENILDRRLQTIVFRKNLAISVRQARQLITHGHISVAGRRVTVPGMLVEAKDEDTIAYEENSP 162          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_PICTO (30S ribosomal protein S4P OS=Picrophilus torridus GN=rps4p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.251e-24
Identity = 64/156 (41.03%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLT-LDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591
            K +  PR  +EK+R+DAE +L+ +YGL+ KRELWR Q  L+  R  AR L   L   +P  I + + L+ ++ R   + E    LD VL+L +E+ LERRL+TLV+K  +A ++  AR  I   HI+V  ++V IPSF+V    +  I ++ TSPF
Sbjct:    9 KKYSTPRHPWEKDRIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTLQAKLRYNDPLAIKQFQLLIGKLSRLNLLGENAT-LDDVLSLNIEDILERRLETLVYKKNLALTMKQARQFITHGHIKVNDRVVTIPSFMVEKSMEDSITYNETSPF 163          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.940e-24
Identity = 66/172 (38.37%), Postives = 98/172 (56.98%), Query Frame = 1
Query:  136 KKPRRGYE-------KERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF*GGRPGRVKRRNI 630
            KK RR +E       +  L+ E  L+G+YGLR KRELW  Q  + + R+ AR LL L      R    + L+++++R G +E+    LD +L L  EN+LERRLQT+V+K G+A++I+ AR LI   HI +G + V  P ++V    +  I+F  TSPF    P +    N+
Sbjct:    5 KKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENV 174          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_THEPD (30S ribosomal protein S4P OS=Thermofilum pendens (strain Hrk 5) GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.550e-24
Identity = 65/154 (42.21%), Postives = 90/154 (58.44%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            K ++ P   + KE L  E++LVGEYGLR KRELW  +  L  IR  AR LL L  +   RI   + L+ R+++ G +      LD VL+LTV + LERRLQT+V++ G+A +I HAR LI   HI V  + V  P ++V  D +  I +   SP
Sbjct:    9 KKWQGPSHPWRKETLLEEMQLVGEYGLRNKRELWIAKSLLREIRAKARKLLALPAEE--RIKLEKPLVSRLYKMGLLPSEDASLDDVLSLTVRDVLERRLQTIVYRKGLATTIRHARQLITHGHIAVNSRRVRSPGYLVSRDEENFISYYEGSP 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METB6 (30S ribosomal protein S4P OS=Methanoregula boonei (strain 6A8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.550e-24
Identity = 65/158 (41.14%), Postives = 96/158 (60.76%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL-DEKNPRRIFEGE--ALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591
            K+++ P+R +EK R++ E RLV EYGLR KRE+W+ Q  L + R AAR+LL L      + +FE +   L+  M R G +    + +D VLAL V   LERRLQTLV++ G+A+S   AR L+   HI +G + V +P ++V    +  I ++  SPF
Sbjct:    9 KSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGPDAD-IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTISYAGKSPF 165          
The following BLAST results are available for this feature:
BLAST of CN186415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RS4_STAMF6.330e-2743.3130S ribosomal protein S4P OS=Staphylothermus marin... [more]
RS4_METKA6.330e-2740.3830S ribosomal protein S4P OS=Methanopyrus kandleri... [more]
RS9_ENCCU2.405e-2642.7740S ribosomal protein S9 OS=Encephalitozoon cunicu... [more]
RS4_HYPBU2.036e-2541.9430S ribosomal protein S4P OS=Hyperthermus butylicu... [more]
RS4_METJA4.536e-2538.9930S ribosomal protein S4P OS=Methanocaldococcus ja... [more]
RS4_THEAC1.011e-2440.7630S ribosomal protein S4P OS=Thermoplasma acidophi... [more]
RS4_PICTO2.251e-2441.0330S ribosomal protein S4P OS=Picrophilus torridus ... [more]
RS4_SULTO2.940e-2438.3730S ribosomal protein S4P OS=Sulfolobus tokodaii G... [more]
RS4_THEPD6.550e-2442.2130S ribosomal protein S4P OS=Thermofilum pendens (... [more]
RS4_METB66.550e-2441.1430S ribosomal protein S4P OS=Methanoregula boonei ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186415 ID=CN186415; Name=CN186415; organism=Citrus sinensis; type=EST; length=695bp
CTTTAAAGAAGACACGGCCTCTTTACGCCATTTGCTTACGCTTTATCGAA
GATCGCAGAGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGC
ACGTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGT
GGCTATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTA
TGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGAGCC
GCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCA
CGTCGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTACGG
CTTCGTGGAAGAGAGGCAGAACAAGCTTGATTATGTGTTGGCCCTCACTG
TGGAGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGC
ATGGCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACAT
TAGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTG
ATTCCCAGAAGCACATTGAATTCTCACTGACAAGTCCATTCTGAGGTGGC
CGCCCTGGAAGAGTGAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGC
CGCAGGTGGAGATGGAGATGAAGAGGATGAAGAATAAATTACCTG
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