CN186415
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_STAMF (30S ribosomal protein S4P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4p PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27 Identity = 68/157 (43.31%), Postives = 101/157 (64.33%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG--EALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K ++ PR + KE L EL+L+G YGLR KRELWR Q + + R+ AR LL P+ I E +ALL R++R G + E + L+ VL LTVE+ LERRLQT+V+K G+A++I+HAR LI HI + + + P ++V + + ++++ TSPF Sbjct: 9 KKWEGPRHPWRKEVLVQELKLLGTYGLRNKRELWRAQTIVRKFRHQARSLLAA----PQEIREQAEKALLNRLYRLGLLHENAS-LEDVLGLTVEDLLERRLQTIVYKKGLARTIYHARQLIIHGHIAIAGRRITSPGYIVSREEEDLVDYAPTSPF 160
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METKA (30S ribosomal protein S4P OS=Methanopyrus kandleri GN=rps4p PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27 Identity = 63/156 (40.38%), Postives = 104/156 (66.67%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNK--LDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588 K ++ PR +E ERL+ E +L+ +YGLR K+ELWR Q L R R A++L+ + +R E EAL R+++ G ++++ + LD +L LTVE+ LERRLQT+V++ G+AK+ AR L+ RHI +G ++V +PS++V + ++ +++S SP Sbjct: 9 KKYETPRHPWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKELMARTDPEAQR--EREALFRKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQLVVHRHIAIGDRIVTVPSYLVSREEEEEVDYSPYSP 162
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS9_ENCCU (40S ribosomal protein S9 OS=Encephalitozoon cuniculi GN=RPS9 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26 Identity = 74/173 (42.77%), Postives = 105/173 (60.69%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFV--------EERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF*GGRPGRVK 618 K PR +EKERL E +LVG YGL+ K ELW ++ ++ + AR LLT NP I G +LLRR+ +YG + +E N L+ VL LT+ ++LERRLQ VF +G+AKS+HHAR+LI R I + Q+V++P F+VR D + IE++ S + G G+ K Sbjct: 8 KRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRY--GDKGKKK 176
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_HYPBU (30S ribosomal protein S4P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4p PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25 Identity = 65/155 (41.94%), Postives = 97/155 (62.58%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K + P+ + KERL EL LVG YGLR KRELW+++ R+ AR LL L + + E +ALL R++ G + E LD VL LT E+FLERRLQT+V+K G+A++I+ AR LI HI + + + P ++V+ D + ++++ TSP+ Sbjct: 9 KKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPPEVREK--EEKALLARLNELGVLPENAT-LDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPY 160
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METJA (30S ribosomal protein S4P OS=Methanocaldococcus jannaschii GN=rps4p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25 Identity = 62/159 (38.99%), Postives = 96/159 (60.38%), Query Frame = 1 Query: 115 RNYGKTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 R + KT++ P + KER++ E L +YGLR KRE+W+ + L + R AR L++ ++ + E L + +YG ++ LD VL+LTVE+ LERRLQTLVF+ G+A++ AR LI HI V ++V PS++V V+ + I ++ SPF Sbjct: 6 RRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPF 162
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_THEAC (30S ribosomal protein S4P OS=Thermoplasma acidophilum GN=rps4p PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24 Identity = 64/157 (40.76%), Postives = 97/157 (61.78%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588 K + PR +EKER+D E ++V +YGL+ K+E+WR + LS IR+ ARDL L ++ N ++ + E +++R++RY + E LD VL+LTVEN L+RRLQT+VF+ +A S+ AR LI HI V + V +P +V + I + SP Sbjct: 9 KKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARLRTNDVNAQK--QLERMIKRLNRYKLLSENAT-LDDVLSLTVENILDRRLQTIVFRKNLAISVRQARQLITHGHISVAGRRVTVPGMLVEAKDEDTIAYEENSP 162
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_PICTO (30S ribosomal protein S4P OS=Picrophilus torridus GN=rps4p PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.251e-24 Identity = 64/156 (41.03%), Postives = 95/156 (60.90%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLT-LDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K + PR +EK+R+DAE +L+ +YGL+ KRELWR Q L+ R AR L L +P I + + L+ ++ R + E LD VL+L +E+ LERRL+TLV+K +A ++ AR I HI+V ++V IPSF+V + I ++ TSPF Sbjct: 9 KKYSTPRHPWEKDRIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTLQAKLRYNDPLAIKQFQLLIGKLSRLNLLGENAT-LDDVLSLNIEDILERRLETLVYKKNLALTMKQARQFITHGHIKVNDRVVTIPSFMVEKSMEDSITYNETSPF 163
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.940e-24 Identity = 66/172 (38.37%), Postives = 98/172 (56.98%), Query Frame = 1 Query: 136 KKPRRGYE-------KERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF*GGRPGRVKRRNI 630 KK RR +E + L+ E L+G+YGLR KRELW Q + + R+ AR LL L R + L+++++R G +E+ LD +L L EN+LERRLQT+V+K G+A++I+ AR LI HI +G + V P ++V + I+F TSPF P + N+ Sbjct: 5 KKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENV 174
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_THEPD (30S ribosomal protein S4P OS=Thermofilum pendens (strain Hrk 5) GN=rps4p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.550e-24 Identity = 65/154 (42.21%), Postives = 90/154 (58.44%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588 K ++ P + KE L E++LVGEYGLR KRELW + L IR AR LL L + RI + L+ R+++ G + LD VL+LTV + LERRLQT+V++ G+A +I HAR LI HI V + V P ++V D + I + SP Sbjct: 9 KKWQGPSHPWRKETLLEEMQLVGEYGLRNKRELWIAKSLLREIRAKARKLLALPAEE--RIKLEKPLVSRLYKMGLLPSEDASLDDVLSLTVRDVLERRLQTIVYRKGLATTIRHARQLITHGHIAVNSRRVRSPGYLVSRDEENFISYYEGSP 160
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METB6 (30S ribosomal protein S4P OS=Methanoregula boonei (strain 6A8) GN=rps4p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.550e-24 Identity = 65/158 (41.14%), Postives = 96/158 (60.76%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL-DEKNPRRIFEGE--ALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K+++ P+R +EK R++ E RLV EYGLR KRE+W+ Q L + R AAR+LL L + +FE + L+ M R G + + +D VLAL V LERRLQTLV++ G+A+S AR L+ HI +G + V +P ++V + I ++ SPF Sbjct: 9 KSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGPDAD-IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTISYAGKSPF 165 The following BLAST results are available for this feature:
BLAST of CN186415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186415 ID=CN186415; Name=CN186415; organism=Citrus sinensis; type=EST; length=695bpback to top |