CN186415
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_SULAC (30S ribosomal protein S4P OS=Sulfolobus acidocaldarius GN=rps4p PE=3 SV=3) HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23 Identity = 63/161 (39.13%), Postives = 96/161 (59.63%), Query Frame = 1 Query: 115 RNYGKTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD--EKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 R K + P + K L E L+G+YGLR K+E+W Q + R+ AR LL L E+N R + L+++++R G +E+ + LD +L+LT EN+LERRLQT+V+K G+A++I+ AR LI HI + + V P +VV + I++ TSPF Sbjct: 5 RKSKKKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAERNIRE----KQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAISGRKVTSPGYVVLRGEEDLIDYYPTSPF 161
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23 Identity = 65/155 (41.94%), Postives = 92/155 (59.35%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K ++ P + KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R G + E LD VL+LTVE+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLSRLKRLGLLPE-DAVLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPF 160
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 1.906e-23 Identity = 58/155 (37.42%), Postives = 91/155 (58.71%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K ++ P+ + KERL+ E L+G YGLR K+ELW+ + R R+ AR LL L + R L+ ++R G ++ +D VL + E LERRLQT+V+K G+AK+I+ AR L+ HI + + V P ++V + +K I+++ SPF Sbjct: 9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRREA--SRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.489e-23 Identity = 65/155 (41.94%), Postives = 91/155 (58.71%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K ++ P + KERLD E LV +Y L+ K+ELW+ + L R AR LL K E LL+R+ R G + E + LD VL+LT+++ LERRLQTLVFK G+A++I AR LI HI V Q++ PS++V + + I + SPF Sbjct: 9 KRYETPSHPWIKERLDRERVLVQKYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPF 160
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.489e-23 Identity = 65/155 (41.94%), Postives = 90/155 (58.06%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K ++ P + KERLD E L +Y L+ K+ELWR + L R AR LL K E + LL+R+HR G + LD VL+LTVE+ LERRLQTLV+K G+A++I AR LI HI V Q++ P ++V + + I ++ SPF Sbjct: 9 KKYETPSHPWIKERLDRERVLKRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLHRLGLLPA-DAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSPF 160
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.489e-23 Identity = 64/155 (41.29%), Postives = 92/155 (59.35%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K ++ P + KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R G + E LD VL+LT+E+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPE-DAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.489e-23 Identity = 64/155 (41.29%), Postives = 92/155 (59.35%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K ++ P + KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R G + E LD VL+LT+E+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPE-DAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.251e-23 Identity = 65/155 (41.94%), Postives = 91/155 (58.71%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K ++ P + KERLD E L+ +Y L+ K+ELWR + L R AR LL K E LL+R++R G + LD VL+LTVE+ L+RRLQT+VFK G+A++I AR LI HI V Q++ P ++V + + I +S TSPF Sbjct: 9 KKYETPSHPWIKERLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERAQLLQRLNRLGLLPA-DAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.246e-23 Identity = 60/166 (36.14%), Postives = 97/166 (58.43%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF*GGRPGRVKR 621 KT+ +PR+ +E +R+ E+ L+ YGLR KRELW+ + L + R R LL + R E A++ R+ R+G +++ + LD +L+L + + LERRLQT V++ G+A +I AR I HI+V Q V +PS++V+ + I++ SP R G +R Sbjct: 9 KTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPL--AREGHPER 171
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.246e-23 Identity = 61/162 (37.65%), Postives = 96/162 (59.26%), Query Frame = 1 Query: 115 RNYGKTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL----DEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588 + + K + P ++K RL+ E++LV +YGLR KRELWR Q L + R ARDLL ++ + + +++++++ G + E LD +L L+VE+FLERRLQT+V++ G+A++I AR I HI V + V PSF+V + + I F SP Sbjct: 5 KRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSP 165 The following BLAST results are available for this feature:
BLAST of CN186415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186415 ID=CN186415; Name=CN186415; organism=Citrus sinensis; type=EST; length=695bpback to top |