CN186415

Overview
NameCN186415
Unique NameCN186415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186415_ssr57 microsatellite CN186415_ssr57:57..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11531 contig Csv1_Contig11531:1..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_SULAC (30S ribosomal protein S4P OS=Sulfolobus acidocaldarius GN=rps4p PE=3 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23
Identity = 63/161 (39.13%), Postives = 96/161 (59.63%), Query Frame = 1
Query:  115 RNYGKTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD--EKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591
            R   K +  P   + K  L  E  L+G+YGLR K+E+W  Q  +   R+ AR LL L   E+N R     + L+++++R G +E+  + LD +L+LT EN+LERRLQT+V+K G+A++I+ AR LI   HI +  + V  P +VV    +  I++  TSPF
Sbjct:    5 RKSKKKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAERNIRE----KQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAISGRKVTSPGYVVLRGEEDLIDYYPTSPF 161          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23
Identity = 65/155 (41.94%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591
            K ++ P   + KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G + E    LD VL+LTVE+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLSRLKRLGLLPE-DAVLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPF 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.906e-23
Identity = 58/155 (37.42%), Postives = 91/155 (58.71%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591
            K ++ P+  + KERL+ E  L+G YGLR K+ELW+ +    R R+ AR LL L  +  R       L+  ++R G ++     +D VL +  E  LERRLQT+V+K G+AK+I+ AR L+   HI +  + V  P ++V  + +K I+++  SPF
Sbjct:    9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRREA--SRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.489e-23
Identity = 65/155 (41.94%), Postives = 91/155 (58.71%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591
            K ++ P   + KERLD E  LV +Y L+ K+ELW+ +  L   R  AR LL    K      E   LL+R+ R G + E  + LD VL+LT+++ LERRLQTLVFK G+A++I  AR LI   HI V  Q++  PS++V  + +  I +   SPF
Sbjct:    9 KRYETPSHPWIKERLDRERVLVQKYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPF 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.489e-23
Identity = 65/155 (41.94%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591
            K ++ P   + KERLD E  L  +Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R+HR G +      LD VL+LTVE+ LERRLQTLV+K G+A++I  AR LI   HI V  Q++  P ++V  + +  I ++  SPF
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLHRLGLLPA-DAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSPF 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.489e-23
Identity = 64/155 (41.29%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591
            K ++ P   + KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G + E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPE-DAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.489e-23
Identity = 64/155 (41.29%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591
            K ++ P   + KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G + E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPE-DAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.251e-23
Identity = 65/155 (41.94%), Postives = 91/155 (58.71%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591
            K ++ P   + KERLD E  L+ +Y L+ K+ELWR +  L   R  AR LL    K      E   LL+R++R G +      LD VL+LTVE+ L+RRLQT+VFK G+A++I  AR LI   HI V  Q++  P ++V  + +  I +S TSPF
Sbjct:    9 KKYETPSHPWIKERLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERAQLLQRLNRLGLLPA-DAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.246e-23
Identity = 60/166 (36.14%), Postives = 97/166 (58.43%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF*GGRPGRVKR 621
            KT+ +PR+ +E +R+  E+ L+  YGLR KRELW+ +  L + R   R LL    +   R   E  A++ R+ R+G +++  + LD +L+L + + LERRLQT V++ G+A +I  AR  I   HI+V  Q V +PS++V+   +  I++   SP    R G  +R
Sbjct:    9 KTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPL--AREGHPER 171          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.246e-23
Identity = 61/162 (37.65%), Postives = 96/162 (59.26%), Query Frame = 1
Query:  115 RNYGKTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL----DEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            + + K +  P   ++K RL+ E++LV +YGLR KRELWR Q  L + R  ARDLL       ++      + + +++++++ G + E    LD +L L+VE+FLERRLQT+V++ G+A++I  AR  I   HI V  + V  PSF+V  + +  I F   SP
Sbjct:    5 KRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSP 165          
The following BLAST results are available for this feature:
BLAST of CN186415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RS4_SULAC1.459e-2339.1330S ribosomal protein S4P OS=Sulfolobus acidocalda... [more]
RS4_PYRHO1.459e-2341.9430S ribosomal protein S4P OS=Pyrococcus horikoshii... [more]
RS4_AERPE1.906e-2337.4230S ribosomal protein S4P OS=Aeropyrum pernix GN=r... [more]
RS4_THESM2.489e-2341.9430S ribosomal protein S4P OS=Thermococcus sibiricu... [more]
RS4_THEGJ2.489e-2341.9430S ribosomal protein S4P OS=Thermococcus gammatol... [more]
RS4_PYRFU2.489e-2341.2930S ribosomal protein S4P OS=Pyrococcus furiosus G... [more]
RS4_PYRAB2.489e-2341.2930S ribosomal protein S4P OS=Pyrococcus abyssi GN=... [more]
RS4_THEON3.251e-2341.9430S ribosomal protein S4P OS=Thermococcus onnurine... [more]
RS4_METTP4.246e-2336.1430S ribosomal protein S4P OS=Methanosaeta thermoph... [more]
RS4_ARCFU4.246e-2337.6530S ribosomal protein S4P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186415 ID=CN186415; Name=CN186415; organism=Citrus sinensis; type=EST; length=695bp
CTTTAAAGAAGACACGGCCTCTTTACGCCATTTGCTTACGCTTTATCGAA
GATCGCAGAGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGC
ACGTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGT
GGCTATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTA
TGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGAGCC
GCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCA
CGTCGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTACGG
CTTCGTGGAAGAGAGGCAGAACAAGCTTGATTATGTGTTGGCCCTCACTG
TGGAGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGC
ATGGCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACAT
TAGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTG
ATTCCCAGAAGCACATTGAATTCTCACTGACAAGTCCATTCTGAGGTGGC
CGCCCTGGAAGAGTGAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGC
CGCAGGTGGAGATGGAGATGAAGAGGATGAAGAATAAATTACCTG
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