CN186415
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22 Identity = 57/155 (36.77%), Postives = 93/155 (60.00%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K ++ P + KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + G +++ +D +L+LT ++ LERRLQT+V+K G++ +I+ AR LI HI V + V P ++V VD + I++ +TS F Sbjct: 9 KKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSF 161
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.613e-22 Identity = 49/58 (84.48%), Postives = 56/58 (96.55%), Query Frame = 1 Query: 454 AKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF*GGRPGRVKRRN 627 AKS+HHARVLIRQRHIRVGRQ+VN+PSF+VR+DSQKHI+FSL SPF GGRPGRVKR+N Sbjct: 1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKN 58
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22 Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 1 Query: 139 KPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 543 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ +LD +L+L V LERRLQT+V++ G+AKSIHHAR LI H+ V + V P F+V Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METLZ (30S ribosomal protein S4P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps4p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22 Identity = 58/156 (37.18%), Postives = 93/156 (59.62%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 585 K + P+R +EK R+++E L YGLR KRE+WR L + R+ AR++L + + P+ I + L+ + RYG + +D +L+L VE+ LERRLQT+V++ G+A+S AR LI HI + Q V++PS++V + + I + TS Sbjct: 9 KQYSSPKRRFEKSRIESERVLAITYGLRNKREIWRATEVLRKHRSGAREVLAMTSSIGEAPKTIARRDELVGTLQRYGLLGP-DAAMDNILSLKVEDILERRLQTIVYRKGLARSPKQARQLITHGHIAINGQRVSVPSYMVSIAEEAGIMYYATS 163
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_THEVO (30S ribosomal protein S4P OS=Thermoplasma volcanium GN=rps4p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.752e-22 Identity = 62/157 (39.49%), Postives = 94/157 (59.87%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588 K + PR +EK+R+D E +++ +YGL+ KRE+WR + LS IR+ AR L L + N ++ + E +++R+ RY + ++ LD VL+LTVEN L+RRLQT+VFK +A S AR LI HI V + V +P +V + I + SP Sbjct: 9 KKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQK--QLERMIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTVPGMLVEAQYEDTIAYYENSP 162
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.752e-22 Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 1 Query: 139 KPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 543 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ LD +L+L V LERRLQTLVF+ G+AKSIHHAR L+ H+ V + V P F+V Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWIVRRARALLSMTAEERAPLEV----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_SULIY (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.594e-22 Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K ++ P + KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + G ++ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSF 161
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_SULIN (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.594e-22 Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K ++ P + KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + G ++ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSF 161
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_SULIM (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.594e-22 Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K ++ P + KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + G ++ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSF 161
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_SULIL (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.594e-22 Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 K ++ P + KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + G ++ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSF 161 The following BLAST results are available for this feature:
BLAST of CN186415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186415 ID=CN186415; Name=CN186415; organism=Citrus sinensis; type=EST; length=695bpback to top |