CN186415

Overview
NameCN186415
Unique NameCN186415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 57/160 (35.62%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            K+F+ PR  +++ R+ +E++LV  YGLR KRE+W+    L   R+ AR LL     +  R  EG      E +L ++ RYG ++   + +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   +P  +V  + + HI +  TSP
Sbjct:    9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGIIKSDAD-IDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATSP 167          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_PYRKO (30S ribosomal protein S4P OS=Pyrococcus kodakaraensis GN=rps4p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 61/155 (39.35%), Postives = 89/155 (57.42%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591
            K ++ P   + KERLD E  L   Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R++R G +      LD VL+LTVE+ LERRLQT+V++ G+A+++  AR LI   HI V  Q++  P ++V  + +  I ++  SPF
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRNYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLYRLGLLPA-DAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIEVNGQVIRSPGYLVLREEEDTITYAKGSPF 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METMJ (30S ribosomal protein S4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 63/157 (40.13%), Postives = 88/157 (56.05%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            K +  P+R +EK RL+ E RL+ +YGLR KRELW+ Q  L + R  AR+L+ L          + + + L+  ++RYG V E  +  D VLAL VE  L+RRLQTLV + G A+S   AR  I   HI +  + V IP +  RV+  +  E S   P
Sbjct:    9 KQYATPKRRFEKTRLEDEKRLIIDYGLRNKRELWKAQSVLRKYRAGARELVALRSGGLSTEDYLKKRDQLVNHLYRYGLVGENADVGD-VLALKVEQQLDRRLQTLVLRRGFARSPKQARQFITHGHIAIKGRRVTIPGY--RVERAEEAEISYYGP 162          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METM7 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 57/158 (36.08%), Postives = 87/158 (55.06%), Query Frame = 1
Query:  115 RNYGKTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            R  GK +  P   +  ER+ +E  +  +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  + E++  LD+VL+L +E+ LERRLQT+V+K G+AK+   AR  I   HI V  + V  PS++V V     IE+   SP
Sbjct:    5 RRLGKKYDTPNHPWIGERIQSEREISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLNIESILERRLQTMVYKKGLAKTAKQARQFIVHGHIAVNGKRVTSPSYLVSVAENDAIEYVPNSP 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METVS (30S ribosomal protein S4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 56/158 (35.44%), Postives = 86/158 (54.43%), Query Frame = 1
Query:  115 RNYGKTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            R  GK +  P   +  ER+  E  +  +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  + E++  LD++L+L +E+ LERRLQTLV++ G+AK+   AR LI   HI V  + V  PS++V V     I +   SP
Sbjct:    5 RRLGKKYDTPNHPWIGERIQKEREISHKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHILSLNIESILERRLQTLVYRKGLAKTAKQARQLIVHGHIAVNGRRVTSPSYLVSVSENNAIGYVPNSP 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METM5 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.181e-19
Identity = 55/158 (34.81%), Postives = 86/158 (54.43%), Query Frame = 1
Query:  115 RNYGKTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            R  GK +  P   +  ER+ +E  +  +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  + E +  LD+VL+L +E+ LERRLQT+V++ G+AK+   AR  I   HI V  + V  P+++V V     IE+   SP
Sbjct:    5 RRLGKKYDTPNHPWIGERIQSEKEISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVESEPTLDHVLSLNIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METMP (30S ribosomal protein S4P OS=Methanococcus maripaludis GN=rps4p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.848e-19
Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  115 RNYGKTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            R  GK +  P   +  ER+  E  +  +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  + E +  LD+VL+L +E+ LERRLQT+VF+ G+AK+   AR  I   HI V  + V  P++++ V     IE+   SP
Sbjct:    5 RRLGKKYDTPNHPWIGERIQKEKEISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILIEEEPTLDHVLSLNIESILERRLQTIVFRKGLAKTPKQARQFIVHGHIAVNGKRVTAPAYLISVAENDAIEYVSNSP 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METMA (30S ribosomal protein S4P OS=Methanosarcina mazei GN=rps4p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.848e-19
Identity = 55/161 (34.16%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL-------DEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            K+++ PR  +++ R+ AE++LV  YGLR K+E+W+    L   R+ AR LL          E       + E +L ++ RYG ++   N +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   IP  +V  + + HI +  +SP
Sbjct:    9 KSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQEGELEGHYATQSEEILSKLIRYGIIKADAN-VDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGSSP 168          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METM6 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.848e-19
Identity = 55/158 (34.81%), Postives = 86/158 (54.43%), Query Frame = 1
Query:  115 RNYGKTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            R  GK +  P   +  ER+  E  +  +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  + E++  LD+VL+L +E+ LERRLQT+V++ G+AK+   AR  I   HI V  + V  P+++V V     IE+   SP
Sbjct:    5 RRLGKKYDTPNHPWIGERIQKEREISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLDIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METAC (30S ribosomal protein S4P OS=Methanosarcina acetivorans GN=rps4p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 54/160 (33.75%), Postives = 87/160 (54.37%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            K+++ P+  +++ R+  E++LV  YGLR K+E+W+    L   R+ AR LL           EG      E +L ++ RYG ++   N +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   IP  +V  + + HI +   SP
Sbjct:    9 KSYETPKHPWQEARMATEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEGGLEGHYRTQSEEILSKLIRYGIIKSDAN-IDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGNSP 167          
The following BLAST results are available for this feature:
BLAST of CN186415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RS4_METBF1.784e-2135.6330S ribosomal protein S4P OS=Methanosarcina barker... [more]
RS4_PYRKO5.190e-2139.3530S ribosomal protein S4P OS=Pyrococcus kodakaraen... [more]
RS4_METMJ1.156e-2040.1330S ribosomal protein S4P OS=Methanoculleus marisn... [more]
RS4_METM73.364e-2036.0830S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METVS9.788e-2035.4430S ribosomal protein S4P OS=Methanococcus vanniel... [more]
RS4_METM52.181e-1934.8130S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METMP2.848e-1934.8130S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METMA2.848e-1934.1630S ribosomal protein S4P OS=Methanosarcina mazei ... [more]
RS4_METM62.848e-1934.8130S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METAC6.345e-1933.7530S ribosomal protein S4P OS=Methanosarcina acetiv... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186415 ID=CN186415; Name=CN186415; organism=Citrus sinensis; type=EST; length=695bp
CTTTAAAGAAGACACGGCCTCTTTACGCCATTTGCTTACGCTTTATCGAA
GATCGCAGAGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGC
ACGTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGT
GGCTATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTA
TGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGAGCC
GCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCA
CGTCGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTACGG
CTTCGTGGAAGAGAGGCAGAACAAGCTTGATTATGTGTTGGCCCTCACTG
TGGAGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGC
ATGGCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACAT
TAGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTG
ATTCCCAGAAGCACATTGAATTCTCACTGACAAGTCCATTCTGAGGTGGC
CGCCCTGGAAGAGTGAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGC
CGCAGGTGGAGATGGAGATGAAGAGGATGAAGAATAAATTACCTG
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