CN186415
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_NITMS (30S ribosomal protein S4P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps4p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19 Identity = 57/150 (38.00%), Postives = 85/150 (56.67%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS 576 + ++KP+R E EL+ +G +GLR KRELW+ LSR+R+ AR LL L ++ R + L++ + R G V LD VL LT + L RRLQT+V K K+ + AR + HI +G + V+IPS+ V V+ + I F+ Sbjct: 9 RVWRKPKRPLNYELKMEELKTLGTFGLRTKRELWKAHTELSRVRHQARSLLALRQEV--RAEKEPILMKSLARIGLVSSDAT-LDDVLNLTANDLLSRRLQTIVTKKLGFKTPYQARQAVIHGHIMIGERKVDIPSYTVTVEEENSIHFA 155
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METTH (30S ribosomal protein S4P OS=Methanobacterium thermoautotrophicum GN=rps4p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19 Identity = 57/158 (36.08%), Postives = 90/158 (56.96%), Query Frame = 1 Query: 115 RNYGKTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588 R K + P + ER+ E RLV +YGL+ K+E+W+ + + R R AR LL + ++ + E E LL + R G + E KL+ VL LTVE+ L RRLQTLV K G+A+++ AR ++ HI + + ++ P ++V+ + I F +SP Sbjct: 5 RKARKKYDTPPHPWNAERIKEENRLVAKYGLKNKKEVWKAETMVRRYRRDARYLLGMASEHTGK--EREQLLGHLVRTGILNEGA-KLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKEARQMVIHGHIALDGRKIDAPGYIVKRGEEDKIGFYPSSP 159
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_META3 (30S ribosomal protein S4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19 Identity = 55/158 (34.81%), Postives = 84/158 (53.16%), Query Frame = 1 Query: 115 RNYGKTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588 R KT+ P + ER+ E L +YGL K+E+W+++ L R AR L++ + E L ++RYG + + LD VL+L +E+ LERRLQTLVF+ G+A + AR I HI V + +N PS++V + + I + SP Sbjct: 5 RRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTSAQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVEEDAISYMPNSP 160
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_CENSY (30S ribosomal protein S4P OS=Cenarchaeum symbiosum GN=rps4p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19 Identity = 59/155 (38.06%), Postives = 87/155 (56.13%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591 + ++KP+R + + ELR +G +GLR KRELW+ LSR+RN AR LL L ++ R + LLR + R G V + LD VL L V + L RRLQT+V K + + AR + HI + ++V IPS+ V V+ + I+ + S F Sbjct: 9 RMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQEVRER--KEPVLLRSLARIGLV-GKDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPSYTVYVEEEGDIKLTGGSAF 160
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_NANEQ (30S ribosomal protein S4P OS=Nanoarchaeum equitans GN=rps4p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18 Identity = 57/154 (37.01%), Postives = 88/154 (57.14%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588 + ++ P ++K+RL E RL+ EYGL+ KRELW + + R AR L E E L ++ + G + E +LD VL LTV++ LERRLQT++ + G+AK++ AR I HI V ++V+ PS++V+ + + IEF SP Sbjct: 6 RKWEGPSHPWQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_HALSA (30S ribosomal protein S4P OS=Halobacterium salinarium GN=rps4p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18 Identity = 56/153 (36.60%), Postives = 80/153 (52.29%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 585 K ++ P Y+ ER+ E L+ YGL+ K ELWR Q L R AR LL GE + R+ R G + E + +LD VL+L V + LERRLQT+V++ G+A ++ AR + H+ V V PS+ V V + + F TS Sbjct: 9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_HALS3 (30S ribosomal protein S4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18 Identity = 56/153 (36.60%), Postives = 80/153 (52.29%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 585 K ++ P Y+ ER+ E L+ YGL+ K ELWR Q L R AR LL GE + R+ R G + E + +LD VL+L V + LERRLQT+V++ G+A ++ AR + H+ V V PS+ V V + + F TS Sbjct: 9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METBU (30S ribosomal protein S4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps4p PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18 Identity = 55/157 (35.03%), Postives = 87/157 (55.41%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNP---RRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588 K++ P+ ++ ER+ +E+ LV +YGLR KRELW+ L R R AR LL ++ E + LL ++ R+ ++ N +D VL L E LERRLQT V + G+A++ AR I HI + + V +P +V + + ++E+ TSP Sbjct: 9 KSYDTPQHPWQAERMASEVELVKKYGLRNKRELWKSLSVLRRFRGDARRLLAESAESDLIGHSKTEADQLLTKLIRFSILKSDSN-IDDVLGLQTEAILERRLQTQVHRLGLARTARQARQFITHGHIAIDGKRVTVPGMMVTREQEMNVEYYGTSP 164
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_HALMA (30S ribosomal protein S4P OS=Haloarcula marismortui GN=rps4p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17 Identity = 56/149 (37.58%), Postives = 78/149 (52.35%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 573 K ++ P ++ ER+ E L+G YGL+ K ELWR Q L R AR LL ++ E E L R+ RYG + E Q++LD VL+L V + LERRLQT+V++ G A + AR I HI + V P V + + F Sbjct: 8 KFYETPNHPFQGERIADEANLIGRYGLKNKEELWRAQSELRGYRREARKLLGSAGEHET---ESEEFLARLKRYGILNE-QDQLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFIVHGHIVLDDARVTRPGMTVETAVESSVGF 152
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_HALWD (30S ribosomal protein S4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps4p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17 Identity = 58/156 (37.18%), Postives = 79/156 (50.64%), Query Frame = 1 Query: 127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE--GEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588 K ++ P Y+ ER+ E L+G YGL+ K ELWR Q L R AR L+ + + + E GE L R+ RYG + + + VL L V + LERRLQT+V++ G+A + AR I HI V V PS +V I F SP Sbjct: 8 KRYETPNHPYQGERIAQEGDLLGRYGLKNKEELWRTQSELREYRREARRLIG-EAQGDVSVAEALGEEFLDRLRRYGILSA-DDDISKVLGLDVSDILERRLQTIVYRQGLASTPKQARQFIVHEHITVNGARVTRPSKMVEETEANAIAFDENSP 161 The following BLAST results are available for this feature:
BLAST of CN186415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186415 ID=CN186415; Name=CN186415; organism=Citrus sinensis; type=EST; length=695bpback to top |