CN186415

Overview
NameCN186415
Unique NameCN186415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_NITMS (30S ribosomal protein S4P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 57/150 (38.00%), Postives = 85/150 (56.67%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS 576
            + ++KP+R    E    EL+ +G +GLR KRELW+    LSR+R+ AR LL L ++   R  +   L++ + R G V      LD VL LT  + L RRLQT+V K    K+ + AR  +   HI +G + V+IPS+ V V+ +  I F+
Sbjct:    9 RVWRKPKRPLNYELKMEELKTLGTFGLRTKRELWKAHTELSRVRHQARSLLALRQEV--RAEKEPILMKSLARIGLVSSDAT-LDDVLNLTANDLLSRRLQTIVTKKLGFKTPYQARQAVIHGHIMIGERKVDIPSYTVTVEEENSIHFA 155          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METTH (30S ribosomal protein S4P OS=Methanobacterium thermoautotrophicum GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 57/158 (36.08%), Postives = 90/158 (56.96%), Query Frame = 1
Query:  115 RNYGKTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            R   K +  P   +  ER+  E RLV +YGL+ K+E+W+ +  + R R  AR LL +  ++  +  E E LL  + R G + E   KL+ VL LTVE+ L RRLQTLV K G+A+++  AR ++   HI +  + ++ P ++V+   +  I F  +SP
Sbjct:    5 RKARKKYDTPPHPWNAERIKEENRLVAKYGLKNKKEVWKAETMVRRYRRDARYLLGMASEHTGK--EREQLLGHLVRTGILNEGA-KLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKEARQMVIHGHIALDGRKIDAPGYIVKRGEEDKIGFYPSSP 159          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_META3 (30S ribosomal protein S4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 55/158 (34.81%), Postives = 84/158 (53.16%), Query Frame = 1
Query:  115 RNYGKTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            R   KT+  P   +  ER+  E  L  +YGL  K+E+W+++  L   R  AR L++       +  E   L   ++RYG + +    LD VL+L +E+ LERRLQTLVF+ G+A +   AR  I   HI V  + +N PS++V +  +  I +   SP
Sbjct:    5 RRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTSAQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVEEDAISYMPNSP 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_CENSY (30S ribosomal protein S4P OS=Cenarchaeum symbiosum GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 59/155 (38.06%), Postives = 87/155 (56.13%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 591
            + ++KP+R +  +    ELR +G +GLR KRELW+    LSR+RN AR LL L ++   R  +   LLR + R G V  +   LD VL L V + L RRLQT+V K     + + AR  +   HI +  ++V IPS+ V V+ +  I+ +  S F
Sbjct:    9 RMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQEVRER--KEPVLLRSLARIGLV-GKDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPSYTVYVEEEGDIKLTGGSAF 160          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_NANEQ (30S ribosomal protein S4P OS=Nanoarchaeum equitans GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 57/154 (37.01%), Postives = 88/154 (57.14%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            + ++ P   ++K+RL  E RL+ EYGL+ KRELW  +    + R  AR L            E E  L ++ + G + E   +LD VL LTV++ LERRLQT++ + G+AK++  AR  I   HI V  ++V+ PS++V+ + +  IEF   SP
Sbjct:    6 RKWEGPSHPWQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_HALSA (30S ribosomal protein S4P OS=Halobacterium salinarium GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 56/153 (36.60%), Postives = 80/153 (52.29%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 585
            K ++ P   Y+ ER+  E  L+  YGL+ K ELWR Q  L   R  AR LL            GE  + R+ R G + E + +LD VL+L V + LERRLQT+V++ G+A ++  AR  +   H+ V    V  PS+ V V  +  + F  TS
Sbjct:    9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_HALS3 (30S ribosomal protein S4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 56/153 (36.60%), Postives = 80/153 (52.29%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 585
            K ++ P   Y+ ER+  E  L+  YGL+ K ELWR Q  L   R  AR LL            GE  + R+ R G + E + +LD VL+L V + LERRLQT+V++ G+A ++  AR  +   H+ V    V  PS+ V V  +  + F  TS
Sbjct:    9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_METBU (30S ribosomal protein S4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps4p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 55/157 (35.03%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNP---RRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            K++  P+  ++ ER+ +E+ LV +YGLR KRELW+    L R R  AR LL    ++        E + LL ++ R+  ++   N +D VL L  E  LERRLQT V + G+A++   AR  I   HI +  + V +P  +V  + + ++E+  TSP
Sbjct:    9 KSYDTPQHPWQAERMASEVELVKKYGLRNKRELWKSLSVLRRFRGDARRLLAESAESDLIGHSKTEADQLLTKLIRFSILKSDSN-IDDVLGLQTEAILERRLQTQVHRLGLARTARQARQFITHGHIAIDGKRVTVPGMMVTREQEMNVEYYGTSP 164          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_HALMA (30S ribosomal protein S4P OS=Haloarcula marismortui GN=rps4p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 56/149 (37.58%), Postives = 78/149 (52.35%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 573
            K ++ P   ++ ER+  E  L+G YGL+ K ELWR Q  L   R  AR LL    ++     E E  L R+ RYG + E Q++LD VL+L V + LERRLQT+V++ G A +   AR  I   HI +    V  P   V    +  + F
Sbjct:    8 KFYETPNHPFQGERIADEANLIGRYGLKNKEELWRAQSELRGYRREARKLLGSAGEHET---ESEEFLARLKRYGILNE-QDQLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFIVHGHIVLDDARVTRPGMTVETAVESSVGF 152          
BLAST of CN186415 vs. ExPASy Swiss-Prot
Match: RS4_HALWD (30S ribosomal protein S4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps4p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 58/156 (37.18%), Postives = 79/156 (50.64%), Query Frame = 1
Query:  127 KTFKKPRRGYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE--GEALLRRMHRYGFVEERQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 588
            K ++ P   Y+ ER+  E  L+G YGL+ K ELWR Q  L   R  AR L+  + +    + E  GE  L R+ RYG +    + +  VL L V + LERRLQT+V++ G+A +   AR  I   HI V    V  PS +V       I F   SP
Sbjct:    8 KRYETPNHPYQGERIAQEGDLLGRYGLKNKEELWRTQSELREYRREARRLIG-EAQGDVSVAEALGEEFLDRLRRYGILSA-DDDISKVLGLDVSDILERRLQTIVYRQGLASTPKQARQFIVHEHITVNGARVTRPSKMVEETEANAIAFDENSP 161          
The following BLAST results are available for this feature:
BLAST of CN186415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RS4_NITMS8.286e-1938.0030S ribosomal protein S4P OS=Nitrosopumilus mariti... [more]
RS4_METTH8.286e-1936.0830S ribosomal protein S4P OS=Methanobacterium ther... [more]
RS4_META38.286e-1934.8130S ribosomal protein S4P OS=Methanococcus aeolicu... [more]
RS4_CENSY8.286e-1938.0630S ribosomal protein S4P OS=Cenarchaeum symbiosum... [more]
RS4_NANEQ1.413e-1837.0130S ribosomal protein S4P OS=Nanoarchaeum equitans... [more]
RS4_HALSA1.413e-1836.6030S ribosomal protein S4P OS=Halobacterium salinar... [more]
RS4_HALS31.413e-1836.6030S ribosomal protein S4P OS=Halobacterium salinar... [more]
RS4_METBU1.846e-1835.0330S ribosomal protein S4P OS=Methanococcoides burt... [more]
RS4_HALMA2.041e-1737.5830S ribosomal protein S4P OS=Haloarcula marismortu... [more]
RS4_HALWD3.481e-1737.1830S ribosomal protein S4P OS=Haloquadratum walsbyi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186415 ID=CN186415; Name=CN186415; organism=Citrus sinensis; type=EST; length=695bp
CTTTAAAGAAGACACGGCCTCTTTACGCCATTTGCTTACGCTTTATCGAA
GATCGCAGAGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGC
ACGTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGT
GGCTATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTA
TGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGAGCC
GCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCA
CGTCGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTACGG
CTTCGTGGAAGAGAGGCAGAACAAGCTTGATTATGTGTTGGCCCTCACTG
TGGAGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGC
ATGGCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACAT
TAGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTG
ATTCCCAGAAGCACATTGAATTCTCACTGACAAGTCCATTCTGAGGTGGC
CGCCCTGGAAGAGTGAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGC
CGCAGGTGGAGATGGAGATGAAGAGGATGAAGAATAAATTACCTG
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