CN186413

Overview
NameCN186413
Unique NameCN186413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186413_ssr792 microsatellite CN186413_ssr792:792..803. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2537 contig Csv1_Contig2537:1..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.762e-11
Identity = 35/126 (27.78%), Postives = 70/126 (55.56%), Query Frame = -2
Query:  230 FSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 607
            F   D + DG I   +L   ++ LG + TE EL+ ++   D D +G +DF EF++ +       D E++L+  F+  DK  +G I A E+   + +LG  +++++ +++++  D +G   I++ E+
Sbjct:   65 FQELDVNKDGAICINDLAVGLKRLGVHRTELELRKIVKAGDKDQDGQLDFDEFVHYL------RDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVNISEQQAEKILKSMDKNGTMTIDWNEW 184          
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: CDPK1_ORYSJ (Calcium-dependent protein kinase isoform 1 OS=Oryza sativa subsp. japonica GN=SPK PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.762e-11
Identity = 45/146 (30.82%), Postives = 76/146 (52.05%), Query Frame = -2
Query:  212 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 649
            ++L++++I   +E F   D      +T  EL  + R       + E+ D++   D D   TI++ EF+   A  +   + E+ L  AF  FDKD +GFI+  +L+     +   + D  ++EMI E D + DGQI+Y EFV +M +
Sbjct:  369 ERLSEEEIVGLREMFKAMDTKNRSVVTFGELKGLKR-YSSVFKDTEINDLMEAAD-DTTSTINWEEFI-AAAVSLNKIEREKHLMAAFTYFDKDGSGFITVDKLQKAC--MERNMEDTFLEEMILEVDQNNDGQIDYAEFVTMMQS 509          
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: MLC1_DROPS (Myosin light chain alkali OS=Drosophila pseudoobscura pseudoobscura GN=Mlc1 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11
Identity = 43/144 (29.86%), Postives = 75/144 (52.08%), Query Frame = -2
Query:  212 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA--RKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DVDGDGQINYEEFVKVMMA 631
            +I   +  F +    G+G I   +LG  +R+L  NPT A ++ M           I   EFL + +  +K K+    E+  E  +++DK++NG +  AEL+H +  LGE L DE+V+ +  +     D +G I Y +F++ +M+
Sbjct:    8 EIENVEFVFEVMGSAGEG-IDAVDLGDALRALNLNPTLALIEKM-GGTKKRNEKKIKMDEFLPIYSQVKKEKEQGCYEDFIECLKLYDKEENGTMMLAELQHALLALGESLDDEQVETLFADCMDPEDDEGLIPYSQFIQRLMS 149          
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: CDPKG_ARATH (Calcium-dependent protein kinase 16 OS=Arabidopsis thaliana GN=CPK16 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11
Identity = 42/150 (28.00%), Postives = 87/150 (58.00%), Query Frame = -2
Query:  218 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP---TEAELQDMINEVDADGNGTIDFPEFLN--LMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 643
            L ++++++ ++ F   D D +G I+ +E+   +     +P    +A + +++  +D++ +G +DF EF+   L   ++++ DSE   +  + AF  FD D +GFI+A ELR    + G K     ++ ++ EAD+D DG+I+ +EF +++
Sbjct:  408 LDEEELADLRDQFDAIDVDKNGVISLEEMRQALAK--DHPWKLKDARVAEILQAIDSNTDGFVDFGEFVAAALHVNQLEEHDSEKWQQRSRAAFEKFDIDGDGFITAEELR---MHTGLK---GSIEPLLEEADIDNDGKISLQEFRRLL 549          
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: CDPKS_ARATH (Calcium-dependent protein kinase 28 OS=Arabidopsis thaliana GN=CPK28 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 41/148 (27.70%), Postives = 83/148 (56.08%), Query Frame = -2
Query:  218 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVM-RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN--LMARKMKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 643
            L + +IS+ ++ F   D D +G I+ +E+   + + L     ++ + +++  +D++ +G +DF EF+   L   ++++ DSE+     + AF  FD D++G+I+  ELR      G       +D ++ EAD+D DG+I+  EF +++
Sbjct:  362 LDEAEISDLRDQFDAIDVDKNGVISLEEMRQALAKDLPWKLKDSRVAEILEAIDSNTDGLVDFTEFVAAALHVHQLEEHDSEKWQLRSRAAFEKFDLDKDGYITPEELRMHTGLRGS------IDPLLDEADIDRDGKISLHEFRRLL 503          
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: ACTN2_HUMAN (Alpha-actinin-2 OS=Homo sapiens GN=ACTN2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 34/103 (33.01%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  335 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELR 643
            +T +Q++EF+ +F+ FD+  +G +  ++    + S+G +  EAE   ++  VD +G GT+ F  F++ M R+  DTD+ E++  +FR+   D+  +I A ELR
Sbjct:  750 ITQEQMNEFRASFNHFDRRKNGLMDHEDFRACLISMGYDLGEAEFARIMTLVDPNGQGTVTFQSFIDFMTRETADTDTAEQVIASFRILASDK-PYILAEELR 851          
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: ACTN2_BOVIN (Alpha-actinin-2 OS=Bos taurus GN=ACTN2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 34/103 (33.01%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  335 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELR 643
            +T +Q++EF+ +F+ FD+  +G +  ++    + S+G +  EAE   ++  VD +G GT+ F  F++ M R+  DTD+ E++  +FR+   D+  +I A ELR
Sbjct:  750 ITQEQMNEFRASFNHFDRRKNGLMDHEDFRACLISMGYDLGEAEFARIMTLVDPNGQGTVTFQSFIDFMTRETADTDTAEQVIASFRILASDK-PYILAEELR 851          
The following BLAST results are available for this feature:
BLAST of CN186413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
SCMC2_XENLA4.762e-1127.78Calcium-binding mitochondrial carrier protein SCaM... [more]
CDPK1_ORYSJ4.762e-1130.82Calcium-dependent protein kinase isoform 1 OS=Oryz... [more]
MLC1_DROPS6.220e-1129.86Myosin light chain alkali OS=Drosophila pseudoobsc... [more]
CDPKG_ARATH6.220e-1128.00Calcium-dependent protein kinase 16 OS=Arabidopsis... [more]
CDPKS_ARATH8.123e-1127.70Calcium-dependent protein kinase 28 OS=Arabidopsis... [more]
ACTN2_HUMAN8.123e-1133.01Alpha-actinin-2 OS=Homo sapiens GN=ACTN2 PE=1 SV=1[more]
ACTN2_BOVIN8.123e-1133.01Alpha-actinin-2 OS=Bos taurus GN=ACTN2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186413 ID=CN186413; Name=CN186413; organism=Citrus sinensis; type=EST; length=803bp
AACCGAAAAGTTTTGCGAGTCACAAGACATATTGACCAGTGAGACAACAT
TCTTCCTACACCATCAGGCCCATCACCATTAAAAGACCATTGCTTCCTTT
AGCCTGACCCTCATGACTATCAAATTAAAAATTGTAAAAGAGAAAACTAG
GAATCCCTTTATAATTTAGTCAACCCATTTTATAAGTATTGGTGGGTTGG
GGTCATTACTTGGCCATCATAACCTTGACAAATTCCTCATAATTTATCTG
GCCATCACCATCAACATCAGCTTCCCTTATCATCTCATCAACTTCTTCAT
CAGTAAGTTTCTCTCCTAGGTTTGTCATCACATGGCGCAGCTCAGCAGCT
GAGATGAAACCATTCTGATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAG
CTCCTCCTCAGAGTCGGTATCCTTCATCTTCCTGGCCATGAGGTTTAGGA
ATTCAGGAAAATCAATAGTTCCATTACCATCAGCATCCACTTCATTGATC
ATGTCCTGGAGCTCAGCCTCAGTGGGGTTCTGACCCAGTGACCTCATAAC
AGTGCCAAGCTCCTTGGTGGTAATGCAACCGTCGCCATCCTTGTCAAACA
AGCTGAAGGCCTCTTTGAACTCAGAGATCTGATCGTCCGTGAGCTGATCC
CTCTTCTCTGTTTCCATGAAAATTTAAAACTCCAAAAAAAGAAGAAATAA
AAAGAAAAAGAAAATTAGAAGCTCACAGAACAACGAAGTCTCACTTACCT
TCAGAGAATTCAGATCTAAAAGTTTTGTTCACGTAGACCTTCACCACCAC
CAC
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