CN186413

Overview
NameCN186413
Unique NameCN186413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186413_ssr792 microsatellite CN186413_ssr792:792..803. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2537 contig Csv1_Contig2537:1..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: CALM_LOCMI (Calmodulin OS=Locusta migratoria PE=1 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 4.838e-72
Identity = 132/147 (89.80%), Postives = 142/147 (96.60%), Query Frame = -2
Query:  209 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 649
            DQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149          
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: CALM_DROME (Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 4.838e-72
Identity = 132/147 (89.80%), Postives = 142/147 (96.60%), Query Frame = -2
Query:  209 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 649
            DQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149          
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: CALM_APLCA (Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 4.838e-72
Identity = 132/147 (89.80%), Postives = 142/147 (96.60%), Query Frame = -2
Query:  209 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 649
            DQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149          
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: CALMA_HALRO (Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 4.838e-72
Identity = 132/147 (89.80%), Postives = 142/147 (96.60%), Query Frame = -2
Query:  209 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 649
            DQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149          
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: CALM1_BRALA (Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 4.838e-72
Identity = 132/147 (89.80%), Postives = 142/147 (96.60%), Query Frame = -2
Query:  209 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 649
            DQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149          
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: CALM1_BRAFL (Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 4.838e-72
Identity = 132/147 (89.80%), Postives = 142/147 (96.60%), Query Frame = -2
Query:  209 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 649
            DQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149          
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: CALM_TRYCR (Calmodulin OS=Trypanosoma cruzi GN=CALA2 PE=3 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 6.318e-72
Identity = 134/147 (91.16%), Postives = 143/147 (97.28%), Query Frame = -2
Query:  209 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 649
            DQL+++QISEFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVD DG+GTIDFPEFL LMARKM+D+DSEEE+KEAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK+MM+K
Sbjct:    3 DQLSNEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEEIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMSK 149          

HSP 2 Score: 70.4774 bits (171), Expect = 1.253e-11
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = -2
Query:  428 RDQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 652
            R     D   E KEAF +FDKDG+G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:   75 RKMQDSDSEEEIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMSK 149          
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: CALM_SACJA (Calmodulin OS=Saccharina japonica GN=cam PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.318e-72
Identity = 132/147 (89.80%), Postives = 142/147 (96.60%), Query Frame = -2
Query:  209 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 649
            DQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAEL DMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE+ EAF+VFDKD NGFISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQINYEEFVK+MM+K
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149          
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: CALM_PLEOS (Calmodulin OS=Pleurotus ostreatus GN=CMD1 PE=2 SV=3)

HSP 1 Score: 270.781 bits (691), Expect = 6.318e-72
Identity = 132/147 (89.80%), Postives = 143/147 (97.28%), Query Frame = -2
Query:  209 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 649
            DQL+++QISEFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKM+DTDSEEE+KEAF+VFDKD NG+ISAAELRHVMTNLGEKLTD EVDEMIREADVDGDGQINYEEFVK+M++K
Sbjct:    3 DQLSEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDNEVDEMIREADVDGDGQINYEEFVKMMLSK 149          
BLAST of CN186413 vs. ExPASy Swiss-Prot
Match: CALM_ELEEL (Calmodulin OS=Electrophorus electricus GN=calm PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 6.318e-72
Identity = 131/147 (89.12%), Postives = 143/147 (97.28%), Query Frame = -2
Query:  209 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 649
            DQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MA+KMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAKKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149          
The following BLAST results are available for this feature:
BLAST of CN186413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
CALM_LOCMI4.838e-7289.80Calmodulin OS=Locusta migratoria PE=1 SV=2[more]
CALM_DROME4.838e-7289.80Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 ... [more]
CALM_APLCA4.838e-7289.80Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2[more]
CALMA_HALRO4.838e-7289.80Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2[more]
CALM1_BRALA4.838e-7289.80Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=... [more]
CALM1_BRAFL4.838e-7289.80Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2[more]
CALM_TRYCR6.318e-7291.16Calmodulin OS=Trypanosoma cruzi GN=CALA2 PE=3 SV=2[more]
CALM_SACJA6.318e-7289.80Calmodulin OS=Saccharina japonica GN=cam PE=2 SV=1[more]
CALM_PLEOS6.318e-7289.80Calmodulin OS=Pleurotus ostreatus GN=CMD1 PE=2 SV=... [more]
CALM_ELEEL6.318e-7289.12Calmodulin OS=Electrophorus electricus GN=calm PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186413 ID=CN186413; Name=CN186413; organism=Citrus sinensis; type=EST; length=803bp
AACCGAAAAGTTTTGCGAGTCACAAGACATATTGACCAGTGAGACAACAT
TCTTCCTACACCATCAGGCCCATCACCATTAAAAGACCATTGCTTCCTTT
AGCCTGACCCTCATGACTATCAAATTAAAAATTGTAAAAGAGAAAACTAG
GAATCCCTTTATAATTTAGTCAACCCATTTTATAAGTATTGGTGGGTTGG
GGTCATTACTTGGCCATCATAACCTTGACAAATTCCTCATAATTTATCTG
GCCATCACCATCAACATCAGCTTCCCTTATCATCTCATCAACTTCTTCAT
CAGTAAGTTTCTCTCCTAGGTTTGTCATCACATGGCGCAGCTCAGCAGCT
GAGATGAAACCATTCTGATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAG
CTCCTCCTCAGAGTCGGTATCCTTCATCTTCCTGGCCATGAGGTTTAGGA
ATTCAGGAAAATCAATAGTTCCATTACCATCAGCATCCACTTCATTGATC
ATGTCCTGGAGCTCAGCCTCAGTGGGGTTCTGACCCAGTGACCTCATAAC
AGTGCCAAGCTCCTTGGTGGTAATGCAACCGTCGCCATCCTTGTCAAACA
AGCTGAAGGCCTCTTTGAACTCAGAGATCTGATCGTCCGTGAGCTGATCC
CTCTTCTCTGTTTCCATGAAAATTTAAAACTCCAAAAAAAGAAGAAATAA
AAAGAAAAAGAAAATTAGAAGCTCACAGAACAACGAAGTCTCACTTACCT
TCAGAGAATTCAGATCTAAAAGTTTTGTTCACGTAGACCTTCACCACCAC
CAC
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