CN186411

Overview
NameCN186411
Unique NameCN186411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186411 vs. ExPASy Swiss-Prot
Match: YDAP_BACSU (Putative thiamine pyrophosphate-containing protein ydaP OS=Bacillus subtilis GN=ydaP PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 66/239 (27.62%), Postives = 108/239 (45.19%), Query Frame = 3
Query:    3 IAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRC---FQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIF 707
            +AA   A+  G +G C+     G + +LN +  A ++  P++ I G  +S + G            D+ QE++    F+ V  +   V++ E   +L++ A+ TA  +     +SV+ +L A       REPV  S      N             ++N A KP+++AG  M+ AK     +E AD     + V   AKG+VP+ HPHF+G   G + T    E +E  D  +  G  F
Sbjct:   57 LAAAAEAKLTGKIGVCLSIAGPGAVHLLNGLYDAKADGAPVLAIAGQVSSGEVGR-----------DYFQEIKLEQMFEDVAVFNREVHSAESLPDLLNQAIRTAYSKKGVAVLSVSDDLFA---EKIKREPVYTSPVYIEGNLEPKKEQLVTCAQYINNAKKPIILAGQGMKKAK--RELLEFADKAAAPIVVTLPAKGVVPDKHPHFLGNL-GQIGTKPAYEAMEECDLLIMLGTSF 278          
BLAST of CN186411 vs. ExPASy Swiss-Prot
Match: DCIP_AZOBR (Indole-3-pyruvate decarboxylase OS=Azospirillum brasilense GN=ipdC PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 65/238 (27.31%), Postives = 100/238 (42.02%), Query Frame = 3
Query:    6 AADGYAR-SRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPVPFSLSPKLS-NEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFND 713
            AAD  AR S  +G   VT+  G  +++NA+AGAY+E  P++ I G P + +     +LHH     D   + + F+ +T  QA +++   A   I   +  A   S+PVY+        IP    + E  P    P    +   L          +  A  PVL+   ++R         ELA   G  V      +GL+ +     +GTY G    A    +VE +D     G I +D
Sbjct:   54 AADAAARYSSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLD--TQFQVFKEITVAQARLDDPAKAPAEIARVLGAARALSRPVYLE-------IPRNMVNAEVEPVGDDPAWPVDRDALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSD 282          
The following BLAST results are available for this feature:
BLAST of CN186411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
YDAP_BACSU1.543e-1527.62Putative thiamine pyrophosphate-containing protein... [more]
DCIP_AZOBR2.910e-1427.31Indole-3-pyruvate decarboxylase OS=Azospirillum br... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186411 ID=CN186411; Name=CN186411; organism=Citrus sinensis; type=EST; length=719bp
GGATCGCTGCCGATGGGTACGCTCGCTCGCGTGGGGTCGGCGCCTGTGTC
GTGACCTTCACCGTTGGTGGGCTTAGCGTGCTTAACGCTATCGCCGGTGC
TTACAGTGAAAATCTGCCGTTGATTTGCATCGTTGGTGGCCCAAACTCCA
ATGATTACGGAACCAACAGGATCCTTCATCATACCATTGGCTTGCCTGAT
TTTAGCCAAGAACTCAGATGCTTTCAGACTGTCACCTGTTATCAGGCTGT
GGTGAATAACTTGGAGGATGCACATGAGTTGATTGATACGGCAGTATCAA
CTGCTTTGAAAGAAAGCAAGCCTGTTTATATCAGCGTTGCTTGTAACTTG
CCTGCGATTCCTCATCCTACTTTTAGCCGAGAGCCCGTTCCATTTTCGCT
TTCTCCCAAGTTGAGTAATGAGATGGGCTTGGAGGCTGCAGTTGAGGCAG
CAGCAGAGTTCTTGAACAAGGCGGTGAAACCAGTGTTGGTTGCTGGGCCC
AAAATGAGAGTGGCCAAGGCTTGCAATGCTTTCGTTGAGCTTGCTGATGC
TTGTGGCTACGCCGTTGCGGTGATGCCATCAGCGAAAGGGCTAGTACCAG
AGCACCATCCCCATTTTATTGGAACTTATTGGGGTGCCGTGAGCACTGCT
TTTTGTGCTGAAATTGTGGAATCTGCTGATGCTTATTTGTTTGCTGGACC
TATATTTAATGACTATAGC
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