CN186406

Overview
NameCN186406
Unique NameCN186406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2009 contig Csv1_Contig2009:37..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186406 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.791e-37
Identity = 83/156 (53.21%), Postives = 107/156 (68.59%), Query Frame = 3
Query:   63 MGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLIS-XXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 527
            M L   P+ S L+ M+E+  +D  + K+ N P+R Y+RDAKAMA TPADV E+PN+Y F+VDMPG+K  +IKVQVE+DNVL++S             KYVRMERR+GKFMRKF LPENA+++ ISAVC DGVL VTV            TI+V++A
Sbjct:    1 MDLGRFPIISILEDMLEV-PEDHNNEKTRNNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTVQKLPPPEPKKPKTIQVQVA 155          
BLAST of CN186406 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.853e-34
Identity = 76/150 (50.67%), Postives = 103/150 (68.67%), Query Frame = 3
Query:   81 PLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLIS-XXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 527
            P+FS L+ M+E  A +    K+ N P+R Y+RDAKAMA TPADV E+P++YVF VDMPG+K  +I+VQ+E++NVL++S             K+VRMERR+GKFMRKF LP+NA++E ISA C DGVL VT+            TI+V++A
Sbjct:    9 PIFSILEDMLE--APEEQTEKTRNNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVTIPKLPPPEPKKPKTIQVQVA 156          
BLAST of CN186406 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.857e-26
Identity = 71/168 (42.26%), Postives = 98/168 (58.33%), Query Frame = 3
Query:   48 MDFRIMGLDSSPLFST-LQHMMEMGADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNS--YVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXX-----AKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 527
            M+  ++G    PL +  +Q ++++   D  + +  N PTR YVRD +AMA TP DVKE   S   V  VDMPG+   D++V+VED NVL IS                 KY+RMERR+GKFMR+F LPE+A+++ + A  +DGVLTVTVD            +EVK+A
Sbjct:    1 MELSVVG--GEPLLAVAMQQLLDLDLPDELE-RQLNPPTRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVTVDKKPPPEPKKPRVVEVKVA 165          
BLAST of CN186406 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 49/110 (44.55%), Postives = 64/110 (58.18%), Query Frame = 3
Query:  141 KSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 470
            K F+ PT +   +  A   T  D KE P ++VF  D+PGLK  ++KVQ+EDD VL IS             + R+ER  GKF R+F LPENA V  + A  ++GVLTVTV
Sbjct:   28 KDFHVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTV 137          
BLAST of CN186406 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  144 SFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 470
            S ++P+ ++ R+  A   T  D KE P ++VF  D+PGLK  ++KV+VEDD VL IS            ++ R+ER  GKF+R+F LPENA ++ + A  ++GVLTVTV
Sbjct:   33 SNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTV 141          
BLAST of CN186406 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  177 DAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 470
            ++ A A T  D KE P  +VF VD+PGLK  ++KV+VE+D VL IS            K+ RMER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   40 ESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of CN186406 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 48/101 (47.52%), Postives = 62/101 (61.39%), Query Frame = 3
Query:  168 YVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 470
            + R+  A   T  D KE P ++VF  D+PGLK  ++KVQ+EDD VL IS             + R+ER  GKFMR+F LPENA VE + A  ++GVLTVTV
Sbjct:   44 FSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTV 144          
BLAST of CN186406 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 3
Query:  174 RDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 470
            RD  A A    D KE P S+VF  D+PG+K  ++KV+VE+ NVL+IS            K+ R+ER  G+FMR+F LPENA V+ + A  ++GVLTVTV
Sbjct:   34 RDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTV 132          
BLAST of CN186406 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  150 NAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 470
            +A + ++ R+  A   T  D KE P ++VF  D+PG+K  ++KV++EDD VL IS            ++ R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   35 SALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTV 141          
BLAST of CN186406 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  177 DAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 470
            DA A AG   D KE P ++VF  D+PGLK  ++KV+VED NVL IS            K+ R+ER  GKF+R+F LPEN   E I A  ++GVLTVTV
Sbjct:   40 DAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTV 137          
The following BLAST results are available for this feature:
BLAST of CN186406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HS176_ARATH1.791e-3753.2117.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HS177_ARATH1.853e-3450.6717.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP19_ORYSJ1.857e-2642.2619.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP14_SOYBN3.176e-1844.5517.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA4.147e-1843.1218.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_SOLLC5.417e-1848.9817.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP16_SOYBN7.074e-1847.5218.5 kDa class I heat shock protein OS=Glycine max... [more]
HS16C_ORYSJ9.239e-1847.4716.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP12_MEDSA1.207e-1742.0618.2 kDa class I heat shock protein OS=Medicago sa... [more]
HS174_ORYSJ1.207e-1750.0017.4 kDa class I heat shock protein OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186406 ID=CN186406; Name=CN186406; organism=Citrus sinensis; type=EST; length=700bp
GCCGTTAGCAGTAGCGAACATCAACAACAGCTAATACTCGCAAAAGAATG
GATTTCAGAATCATGGGTTTGGACTCATCGCCACTCTTTTCAACTCTGCA
GCACATGATGGAGATGGGGGCGGACGACTCCGCTGACAACAAGTCATTCA
ACGCGCCGACGCGCACGTACGTGAGAGACGCCAAGGCAATGGCGGGGACG
CCTGCGGACGTAAAGGAGTATCCGAACTCGTACGTGTTCATCGTCGACAT
GCCCGGACTGAAGTCGGGGGACATCAAGGTCCAAGTGGAGGACGACAATG
TGCTGCTCATAAGCGGAGAGAGGAAGCGGGAGGAGGAGAAAGAGGGGGCC
AAGTATGTGAGAATGGAGAGGAGGGTCGGCAAGTTTATGAGGAAATTTGT
GCTGCCTGAGAATGCTAACGTTGAAGCCATTTCGGCTGTGTGTCAGGACG
GAGTGTTGACTGTGACCGTCGATAAGCTGCCACCGCCGGAGCCCAAGAAG
CCCAAGACCATTGAGGTTAAGATTGCTTGAACTTTAAAGAGAGAGAATAT
GCTGGATTGTGGGTGCTGATGTCTTTTCTATTTGCCGGTTGTTGTTATGA
ATAATTTTGCTTGTGGGTGTGACGGTACTATGCCTCTGTAACCTCCTCTT
CCTTTTTCTTTTTTTGTTTTTCTTCCCTTTTTTTCGAAAATTCTCTCTGT
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