CN186399

Overview
NameCN186399
Unique NameCN186399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSX_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Saccharomyces cerevisiae GN=YJL045W PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.139e-27
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWE--NEKVRLDYRPVHMNTLDD-EIESFPPKARVY 688
            +IRLNMQR MQ + +VFRTQ+TL+EG + I +  ++F DV ++D+S+IWN+D             A  T  SA  RKESRGAHARED+ KRDD NW KHTL + +  +  V++ YR V  +TLD+ E    PP  R Y
Sbjct:  497 QIRLNMQRTMQKDVSVFRTQDTLDEGVRNITEVDKTFEDVHVSDKSMIWNSDLVETLELQNLLTCATQTAVSASKRKESRGAHAREDYAKRDDVNWRKHTLSWQKGTSTPVKIKYRNVIAHTLDENECAPVPPAVRSY 634          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Saccharomyces cerevisiae GN=SDH1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.648e-27
Identity = 68/139 (48.92%), Postives = 87/139 (62.59%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENE---KVRLDYRPVHMNTLDD-EIESFPPKARVY 688
            +IR+NM++ MQ + +VFRTQ +L+EG + I    ++F DVK TDRS+IWN+D             A  T  SA  RKESRGAHARED+  RDDE+WMKHTL  W+ +    V L YR V  +TLD+ E  S PP  R Y
Sbjct:  503 EIRMNMKQTMQKDVSVFRTQSSLDEGVRNITAVEKTFDDVKTTDRSMIWNSDLVETLELQNLLTCASQTAVSAANRKESRGAHAREDYPNRDDEHWMKHTLS-WQKDVAAPVTLKYRRVIDHTLDEKECPSVPPTVRAY 640          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSAA_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit A, mitochondrial OS=Xenopus laevis GN=sdha-A PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.127e-27
Identity = 67/153 (43.79%), Postives = 87/153 (56.86%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDD-----------------ENWMKHTLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 688
            +IR+NMQ+ MQN+AAVFRT   L+EGC+ +     S  D+K  DR ++WNTD             A  T++ AEARKESRGAHARED+  R D                 E+W KHTL Y + + KV L+YRPV   TL+++  S PP  R Y
Sbjct:  513 EIRINMQKTMQNHAAVFRTGSVLKEGCEKLSVINSSMDDIKTFDRGIVWNTDLVETLELQNLMLCALQTINGAEARKESRGAHAREDYKVRIDEYDFSKPLQGQQKKSFNEHWRKHTLSYVDKKGKVSLEYRPVIDTTLNEDCASVPPAIRSY 665          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_DANRE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Danio rerio GN=sdha PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.061e-26
Identity = 70/155 (45.16%), Postives = 92/155 (59.35%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDE-----------------NWMKHTLGYWENE--KVRLDYRPVHMNTLD-DEIESFPPKARVY 688
            +IRLNMQ+ MQ++AAVFRT + L+EGC  ++  ++S  D+K  DR ++WNTD            NA  T+ SAEARKESRGAHAREDF  R DE                 +W KHTL Y + E  KV L+YRPV  ++LD ++  + PP  R Y
Sbjct:  507 EIRLNMQKTMQSHAAVFRTGDVLKEGCVKMESVYKSMDDIKTFDRGIVWNTDLVETLELQNLMLNAVQTIVSAEARKESRGAHAREDFKDRVDEYDYSKPLQGQVKKPFEQHWRKHTLSYVDPETGKVTLEYRPVIDSSLDAEDCAAIPPAIRSY 661          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_XENTR (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Xenopus tropicalis GN=sdha PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.365e-26
Identity = 65/153 (42.48%), Postives = 87/153 (56.86%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDD-----------------ENWMKHTLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 688
            ++R+NMQ+ MQN+AAVFRT   L+EGC+ +     +  D+K  DR ++WNTD             A  T++ AEARKESRGAHARED+  R D                 E+W KHTL Y + + KV L+YRPV   TL+++  S PP  R Y
Sbjct:  513 ELRINMQKTMQNHAAVFRTGSVLKEGCEKLSAINSTMDDIKTFDRGIVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVRIDEYDYSKPIQGQQKKSFSEHWRKHTLSYVDGKGKVSLEYRPVIDTTLNEDCVSVPPAIRSY 665          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSAB_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit B, mitochondrial OS=Xenopus laevis GN=sdha-B PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.268e-26
Identity = 66/153 (43.14%), Postives = 88/153 (57.52%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDD-----------------ENWMKHTLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 688
            ++RLNMQ+ MQ +AAVFRT   L+EGC+ +     +  D+K  DR ++WNTD             A  T++SAEARKESRGAHARED+  R D                 E+W KHTL Y +++ KV L+YRPV   TL+++  S PP  R Y
Sbjct:  513 ELRLNMQKTMQTHAAVFRTGSVLKEGCEKLSVINSAMDDLKTFDRGIVWNTDVVETLELQNLMLCALQTINSAEARKESRGAHAREDYKTRIDEYDYSKPIQGQQKKSFSEHWRKHTLSYVDSKGKVSLEYRPVIDATLNEDCASVPPAIRSY 665          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_SCHPO (Probable succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Schizosaccharomyces pombe GN=sdh1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 63/139 (45.32%), Postives = 89/139 (64.03%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWEN---EKVRLDYRPVHMNTLDD-EIESFPPKARVY 688
            +IRL+MQ+ MQ + +VFR +ETL+EG + I +   ++ D+ + DR LIWNTD             A  T ++A  RKESRGAHARED+ +RDD+NW+KHTL  W++   + V L YR V   T+D+ E++  PP  RVY
Sbjct:  504 EIRLDMQKTMQRDVSVFRMEETLQEGVKNIARVDGTYKDIGIRDRGLIWNTDLVEALELRNLLTCAVQTANAALNRKESRGAHAREDYPERDDKNWIKHTL-TWQHKTGDPVTLKYRAVTRTTMDENEVKPVPPFKRVY 641          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_DROME (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Drosophila melanogaster GN=Scs-fp PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.614e-25
Identity = 66/153 (43.14%), Postives = 89/153 (58.17%), Query Frame = -2
Query:  284 IRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDE-----------------NWMKHTLGYW--ENEKVRLDYRPVHMNTLDDEIESFPPKARVY 685
            +RL MQ+ MQ++AAVFR    L++G   + + ++ F D+K+ DRSLIWN+D            NA +T+ SAEARKESRGAHAREDF  R+DE                 +W KHTL +   +N  + LDYR V   TLD+E+ + PP  R Y
Sbjct:  509 LRLKMQKTMQHHAAVFRDGPILQDGVNKMKEIYKQFKDIKVVDRSLIWNSDLVETLELQNLLANAQMTIVSAEARKESRGAHAREDFKVREDEYDFSKPLDGQQKKPMDQHWRKHTLSWVCNDNGDITLDYRNVIDTTLDNEVSTVPPAIRSY 661          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_MOUSE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Mus musculus GN=Sdha PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.435e-23
Identity = 64/155 (41.29%), Postives = 85/155 (54.84%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDD-----------------ENWMKHTLGYWE--NEKVRLDYRPVHMNTLDD-EIESFPPKARVY 688
            ++RLNMQ+ MQN+AAVFR    L+EGC+ I + +     +K  DR ++WNTD             A  T++ AEARKESRGAHARED+  R D                 E+W KHTL Y +    KV L+YRPV   TL++ +  + PP  R Y
Sbjct:  510 ELRLNMQKSMQNHAAVFRVGSVLQEGCEKISQLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVRVDEYDYSKPIQGQQKKPFGEHWRKHTLSYVDIKTGKVTLEYRPVIDKTLNEADCATVPPAIRSY 664          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_RAT (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Rattus norvegicus GN=Sdha PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.196e-23
Identity = 62/155 (40.00%), Postives = 86/155 (55.48%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDD-----------------ENWMKHTLGYWENE--KVRLDYRPVHMNTLDD-EIESFPPKARVY 688
            ++RL+MQ+ MQ++AAVFR    L+EGC+ + + +     +K  DR ++WNTD             A  T++ AEARKESRGAHARED+  R D                 E+W KHTL Y + +  KV LDYRPV   TL++ +  + PP  R Y
Sbjct:  502 ELRLSMQKSMQSHAAVFRVGSVLQEGCEKVSQLYGDLQHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVRIDEYDYSKPIEGQQKKPFAEHWRKHTLSYVDTKTGKVTLDYRPVIDKTLNEADCATVPPAIRSY 656          
The following BLAST results are available for this feature:
BLAST of CN186399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
DHSX_YEAST2.139e-2747.83Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_YEAST3.648e-2748.92Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSAA_XENLA8.127e-2743.79Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_DANRE1.061e-2645.16Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_XENTR2.365e-2642.48Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSAB_XENLA5.268e-2643.14Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_SCHPO1.174e-2545.32Probable succinate dehydrogenase [ubiquinone] flav... [more]
DHSA_DROME2.614e-2543.14Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_MOUSE1.435e-2341.29Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_RAT3.196e-2340.00Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002N10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186399 ID=CN186399; Name=CN186399; organism=Citrus sinensis; type=EST; length=689bp
TTTTTTTTTCGCTAAGCCAAAATATATTATTATTAATTTAACAATGAGTT
TAAACACCTATCCAGCCGTCCAACAACCATAAAGCTTATTACCCGCGCTT
AAGCATGAACAAAATGCAAACTCTGGTTGAAATTGATAGAACCTTGCAAT
ATTAGAAGTTTAATTCTGATCAATGCAATAATTATTTTGCCAAAATGCTG
TAGCTACAACAATTTATTGAATTCCCCCCTCTCTTCCTTCCTTTCTCCAG
TTTTTCTTATTTTTGGGGAGAGCAGATAGATCAATATACACGAGCTTTAG
GTGGGAAGGACTCAATTTCATCGTCCAGCGTATTCATGTGAACTGGTCTG
TAATCCAATCGTACCTTCTCATTCTCCCAATATCCCAGAGTGTGCTTCAT
CCAGTTCTCATCATCTCTTTTCGTAAAATCTTCACGTGCATGAGCTCCTC
TACTCTCTTTCCTGGCTTCAGCAGAATGCATGGTGATGCATGCATTTATC
AAAAGGTTTTCCAACTCTATAGTTTCTATCAAGTCAGTGTTCCATATCAA
ACTACGATCTGTCAACTTAACATCATGGAAACTCTCCCATGCCTTGTCAA
TTAATTGACAACCTTCCTCCAATGTTTCCTGTGTTCGGAAGACAGCGGCA
TTATTTTGCATCACGCGTTGCATATTCAACCGAATTTTT
back to top