CN186399
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_CHICK (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Gallus gallus GN=SDHA PE=1 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 3.196e-23 Identity = 65/153 (42.48%), Postives = 84/153 (54.90%), Query Frame = -2 Query: 284 RLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDD-----------------ENWMKHTLGYWE--NEKVRLDYRPVHMNTLDDE-IESFPPKARVY 682 RLNMQ+ MQ++AAVFRT L+EGC+ + + + +K DR ++WNTD A T++ AEARKESRGAHARED+ R D E+W KHTL Y + + KV L YRPV TL++E S PP R Y Sbjct: 513 RLNMQKTMQSHAAVFRTGSILQEGCEKLSQIYCDLAHLKTFDRGIVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKFRIDDFDYSKPLQGQQKRPFEEHWRKHTLSYVDVKSGKVTLKYRPVIDRTLNEEDCSSVPPAIRSY 665
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_MACFA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Macaca fascicularis GN=SDHA PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23 Identity = 64/155 (41.29%), Postives = 84/155 (54.19%), Query Frame = -2 Query: 284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDD-----------------ENWMKHTLGYWE--NEKVRLDYRPVHMNTLDD-EIESFPPKARVY 688 ++RL+MQ+ MQN+AAVFR L+EGC I K + +K DR ++WNTD A T++ AEARKESRGAHARED+ R D E+W KHTL Y + KV L+YRPV TL++ + + PP R Y Sbjct: 510 ELRLSMQKSMQNHAAVFRVGSVLQEGCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKARIDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVSTGKVTLEYRPVIDKTLNEADCATVPPAIRSY 664
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_PONAB (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Pongo abelii GN=SDHA PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23 Identity = 64/155 (41.29%), Postives = 84/155 (54.19%), Query Frame = -2 Query: 284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDD-----------------ENWMKHTLGYWE--NEKVRLDYRPVHMNTLDD-EIESFPPKARVY 688 ++RL+MQ+ MQN+AAVFR L+EGC I K + +K DR ++WNTD A T++ AEARKESRGAHARED+ R D E+W KHTL Y + KV L+YRPV TL++ + + PP R Y Sbjct: 510 ELRLSMQKSMQNHAAVFRVGSVLQEGCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVRIDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVSTGKVTLEYRPVIDKTLNEADCATVPPAIRSY 664
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_HUMAN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Homo sapiens GN=SDHA PE=1 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23 Identity = 64/155 (41.29%), Postives = 84/155 (54.19%), Query Frame = -2 Query: 284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDD-----------------ENWMKHTLGYWE--NEKVRLDYRPVHMNTLDD-EIESFPPKARVY 688 ++RL+MQ+ MQN+AAVFR L+EGC I K + +K DR ++WNTD A T++ AEARKESRGAHARED+ R D E+W KHTL Y + KV L+YRPV TL++ + + PP R Y Sbjct: 510 ELRLSMQKSMQNHAAVFRVGSVLQEGCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVRIDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKTLNEADCATVPPAIRSY 664
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_BOVIN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Bos taurus GN=SDHA PE=1 SV=3) HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20 Identity = 60/155 (38.71%), Postives = 81/155 (52.26%), Query Frame = -2 Query: 284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDE-----------------NWMKHTLGYWE--NEKVRLDYRPVHMNTLDD-EIESFPPKARVY 688 ++RLNMQ+ MQ++AAVFR L+EGC+ I + +K DR ++WNTD A T++ AEARKESRG REDF +R DE +W KHTL Y + KV L+YRPV TL++ + + PP Y Sbjct: 511 ELRLNMQKSMQSHAAVFRVGSVLQEGCEKISSLYGDLRHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGGPRREDFKERVDEYDYSKPIQGQQKKPFEQHWRKHTLSYVDIKTGKVTLEYRPVIDRTLNETDCATVPPAIGSY 665
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_CAEEL (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Caenorhabditis elegans GN=sdha-1 PE=2 SV=3) HSP 1 Score: 96.6709 bits (239), Expect = 1.257e-19 Identity = 60/155 (38.71%), Postives = 85/155 (54.84%), Query Frame = -2 Query: 284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDE-----------------NWMKHTL--GYWENEKVRLDYRPVHMNTLD-DEIESFPPKARVY 688 ++RL MQ+ MQN+AAVFR + L+EG +++ K ++ + + D+ L+WN+D NA T+ +AE R+ESRGAHAR+DF R DE +W KH++ E +V LDYRPV TLD E + PPK R Y Sbjct: 492 ELRLTMQKSMQNHAAVFRRGDILKEGVKVLSKLYKDQAHLNVADKGLVWNSDLIETLELQNLLINATQTIVAAENREESRGAHARDDFPDRLDELDYSKPLEGQTKKELKDHWRKHSIIRSNIETGEVSLDYRPVIDTTLDKSETDWVPPKVRSY 646
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_COXBU (Succinate dehydrogenase flavoprotein subunit OS=Coxiella burnetii GN=sdhA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15 Identity = 45/132 (34.09%), Postives = 71/132 (53.79%), Query Frame = -2 Query: 290 IRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKAR 685 +R M++ M + VFR ++ +++G + + K E KLTD S +N + T SA+ R ESRGAH+R D+ +RDD NW+KHT+ + + + YRPV+M ++ FPPK+R Sbjct: 460 LRQEMRKAMSEDFGVFREEQKMKQGLERLQKLNERLQRAKLTDTSRTFNNARIEALELDNLMEVSYATAVSAQQRTESRGAHSRYDYKERDDANWLKHTVYFRDG---HIAYRPVNMK--PKGMDPFPPKSR 586
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: FRDA_ECOLI (Fumarate reductase flavoprotein subunit OS=Escherichia coli (strain K12) GN=frdA PE=1 SV=3) HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15 Identity = 52/138 (37.68%), Postives = 72/138 (52.17%), Query Frame = -2 Query: 284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAR--EDFTKRDDENWMKHTLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 688 KIR M M+ ++RT E +++ + + E F V++TD S ++NTD A HSA ARKESRGAH R E T+RDD N++KHTL + + + RL+Y V + TL PP RVY Sbjct: 451 KIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVKITTL-------PPAKRVY 581
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: FRDA_HAEIN (Fumarate reductase flavoprotein subunit OS=Haemophilus influenzae GN=frdA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15 Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = -2 Query: 284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYW-ENEKVRLDYRPVHMNTLDDEIESFPPKARVY 688 +IR M VM+ ++R Q ++++ I + E + ++++D S ++NTD A +SA RKESRGAH R D+T+RDD N++KHTL ++ EN R++Y PV +I P RVY Sbjct: 452 EIRDEMGTVMEEGCGIYRDQASMQKAVDKIAELKERYKRIRVSDNSSVFNTDVLYTVELGYILDVAQSIANSAIERKESRGAHQRLDYTERDDVNYLKHTLAFYNENGAPRIEYSPV-------KITKSQPAKRVY 580
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_ECOLI (Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli (strain K12) GN=sdhA PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13 Identity = 49/134 (36.57%), Postives = 67/134 (50.00%), Query Frame = -2 Query: 284 IRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 685 IR +Q MQ+N +VFR + + +G + + E + +L D S +NT A T SA R ESRGAH+R DF RDDENW+ H+L E+E + R V+M +FPPK R Y Sbjct: 459 IRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESES--MTRRSVNME--PKLRPAFPPKIRTY 588 The following BLAST results are available for this feature:
BLAST of CN186399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186399 ID=CN186399; Name=CN186399; organism=Citrus sinensis; type=EST; length=689bpback to top |