CN186399

Overview
NameCN186399
Unique NameCN186399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_CHICK (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Gallus gallus GN=SDHA PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.196e-23
Identity = 65/153 (42.48%), Postives = 84/153 (54.90%), Query Frame = -2
Query:  284 RLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDD-----------------ENWMKHTLGYWE--NEKVRLDYRPVHMNTLDDE-IESFPPKARVY 682
            RLNMQ+ MQ++AAVFRT   L+EGC+ + + +     +K  DR ++WNTD             A  T++ AEARKESRGAHARED+  R D                 E+W KHTL Y +  + KV L YRPV   TL++E   S PP  R Y
Sbjct:  513 RLNMQKTMQSHAAVFRTGSILQEGCEKLSQIYCDLAHLKTFDRGIVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKFRIDDFDYSKPLQGQQKRPFEEHWRKHTLSYVDVKSGKVTLKYRPVIDRTLNEEDCSSVPPAIRSY 665          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_MACFA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Macaca fascicularis GN=SDHA PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 64/155 (41.29%), Postives = 84/155 (54.19%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDD-----------------ENWMKHTLGYWE--NEKVRLDYRPVHMNTLDD-EIESFPPKARVY 688
            ++RL+MQ+ MQN+AAVFR    L+EGC  I K +     +K  DR ++WNTD             A  T++ AEARKESRGAHARED+  R D                 E+W KHTL Y +    KV L+YRPV   TL++ +  + PP  R Y
Sbjct:  510 ELRLSMQKSMQNHAAVFRVGSVLQEGCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKARIDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVSTGKVTLEYRPVIDKTLNEADCATVPPAIRSY 664          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_PONAB (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Pongo abelii GN=SDHA PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 64/155 (41.29%), Postives = 84/155 (54.19%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDD-----------------ENWMKHTLGYWE--NEKVRLDYRPVHMNTLDD-EIESFPPKARVY 688
            ++RL+MQ+ MQN+AAVFR    L+EGC  I K +     +K  DR ++WNTD             A  T++ AEARKESRGAHARED+  R D                 E+W KHTL Y +    KV L+YRPV   TL++ +  + PP  R Y
Sbjct:  510 ELRLSMQKSMQNHAAVFRVGSVLQEGCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVRIDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVSTGKVTLEYRPVIDKTLNEADCATVPPAIRSY 664          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_HUMAN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Homo sapiens GN=SDHA PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 64/155 (41.29%), Postives = 84/155 (54.19%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDD-----------------ENWMKHTLGYWE--NEKVRLDYRPVHMNTLDD-EIESFPPKARVY 688
            ++RL+MQ+ MQN+AAVFR    L+EGC  I K +     +K  DR ++WNTD             A  T++ AEARKESRGAHARED+  R D                 E+W KHTL Y +    KV L+YRPV   TL++ +  + PP  R Y
Sbjct:  510 ELRLSMQKSMQNHAAVFRVGSVLQEGCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVRIDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKTLNEADCATVPPAIRSY 664          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_BOVIN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Bos taurus GN=SDHA PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 60/155 (38.71%), Postives = 81/155 (52.26%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDE-----------------NWMKHTLGYWE--NEKVRLDYRPVHMNTLDD-EIESFPPKARVY 688
            ++RLNMQ+ MQ++AAVFR    L+EGC+ I   +     +K  DR ++WNTD             A  T++ AEARKESRG   REDF +R DE                 +W KHTL Y +    KV L+YRPV   TL++ +  + PP    Y
Sbjct:  511 ELRLNMQKSMQSHAAVFRVGSVLQEGCEKISSLYGDLRHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGGPRREDFKERVDEYDYSKPIQGQQKKPFEQHWRKHTLSYVDIKTGKVTLEYRPVIDRTLNETDCATVPPAIGSY 665          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_CAEEL (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Caenorhabditis elegans GN=sdha-1 PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.257e-19
Identity = 60/155 (38.71%), Postives = 85/155 (54.84%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDE-----------------NWMKHTL--GYWENEKVRLDYRPVHMNTLD-DEIESFPPKARVY 688
            ++RL MQ+ MQN+AAVFR  + L+EG +++ K ++    + + D+ L+WN+D            NA  T+ +AE R+ESRGAHAR+DF  R DE                 +W KH++     E  +V LDYRPV   TLD  E +  PPK R Y
Sbjct:  492 ELRLTMQKSMQNHAAVFRRGDILKEGVKVLSKLYKDQAHLNVADKGLVWNSDLIETLELQNLLINATQTIVAAENREESRGAHARDDFPDRLDELDYSKPLEGQTKKELKDHWRKHSIIRSNIETGEVSLDYRPVIDTTLDKSETDWVPPKVRSY 646          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_COXBU (Succinate dehydrogenase flavoprotein subunit OS=Coxiella burnetii GN=sdhA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 45/132 (34.09%), Postives = 71/132 (53.79%), Query Frame = -2
Query:  290 IRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKAR 685
            +R  M++ M  +  VFR ++ +++G + + K  E     KLTD S  +N               +  T  SA+ R ESRGAH+R D+ +RDD NW+KHT+ + +     + YRPV+M      ++ FPPK+R
Sbjct:  460 LRQEMRKAMSEDFGVFREEQKMKQGLERLQKLNERLQRAKLTDTSRTFNNARIEALELDNLMEVSYATAVSAQQRTESRGAHSRYDYKERDDANWLKHTVYFRDG---HIAYRPVNMK--PKGMDPFPPKSR 586          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: FRDA_ECOLI (Fumarate reductase flavoprotein subunit OS=Escherichia coli (strain K12) GN=frdA PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 52/138 (37.68%), Postives = 72/138 (52.17%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAR--EDFTKRDDENWMKHTLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 688
            KIR  M   M+    ++RT E +++    + +  E F  V++TD S ++NTD             A    HSA ARKESRGAH R  E  T+RDD N++KHTL + + +   RL+Y  V + TL       PP  RVY
Sbjct:  451 KIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVKITTL-------PPAKRVY 581          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: FRDA_HAEIN (Fumarate reductase flavoprotein subunit OS=Haemophilus influenzae GN=frdA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYW-ENEKVRLDYRPVHMNTLDDEIESFPPKARVY 688
            +IR  M  VM+    ++R Q ++++    I +  E +  ++++D S ++NTD             A    +SA  RKESRGAH R D+T+RDD N++KHTL ++ EN   R++Y PV       +I    P  RVY
Sbjct:  452 EIRDEMGTVMEEGCGIYRDQASMQKAVDKIAELKERYKRIRVSDNSSVFNTDVLYTVELGYILDVAQSIANSAIERKESRGAHQRLDYTERDDVNYLKHTLAFYNENGAPRIEYSPV-------KITKSQPAKRVY 580          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_ECOLI (Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli (strain K12) GN=sdhA PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 49/134 (36.57%), Postives = 67/134 (50.00%), Query Frame = -2
Query:  284 IRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 685
            IR  +Q  MQ+N +VFR  + + +G + +    E   + +L D S  +NT              A  T  SA  R ESRGAH+R DF  RDDENW+ H+L   E+E   +  R V+M        +FPPK R Y
Sbjct:  459 IRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESES--MTRRSVNME--PKLRPAFPPKIRTY 588          
The following BLAST results are available for this feature:
BLAST of CN186399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
DHSA_CHICK3.196e-2342.48Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_MACFA4.174e-2341.29Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_PONAB5.451e-2341.29Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_HUMAN5.451e-2341.29Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_BOVIN1.137e-2038.71Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_CAEEL1.257e-1938.71Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_COXBU3.203e-1534.09Succinate dehydrogenase flavoprotein subunit OS=Co... [more]
FRDA_ECOLI4.184e-1537.68Fumarate reductase flavoprotein subunit OS=Escheri... [more]
FRDA_HAEIN7.136e-1534.56Fumarate reductase flavoprotein subunit OS=Haemoph... [more]
DHSA_ECOLI6.679e-1336.57Succinate dehydrogenase flavoprotein subunit OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186399 ID=CN186399; Name=CN186399; organism=Citrus sinensis; type=EST; length=689bp
TTTTTTTTTCGCTAAGCCAAAATATATTATTATTAATTTAACAATGAGTT
TAAACACCTATCCAGCCGTCCAACAACCATAAAGCTTATTACCCGCGCTT
AAGCATGAACAAAATGCAAACTCTGGTTGAAATTGATAGAACCTTGCAAT
ATTAGAAGTTTAATTCTGATCAATGCAATAATTATTTTGCCAAAATGCTG
TAGCTACAACAATTTATTGAATTCCCCCCTCTCTTCCTTCCTTTCTCCAG
TTTTTCTTATTTTTGGGGAGAGCAGATAGATCAATATACACGAGCTTTAG
GTGGGAAGGACTCAATTTCATCGTCCAGCGTATTCATGTGAACTGGTCTG
TAATCCAATCGTACCTTCTCATTCTCCCAATATCCCAGAGTGTGCTTCAT
CCAGTTCTCATCATCTCTTTTCGTAAAATCTTCACGTGCATGAGCTCCTC
TACTCTCTTTCCTGGCTTCAGCAGAATGCATGGTGATGCATGCATTTATC
AAAAGGTTTTCCAACTCTATAGTTTCTATCAAGTCAGTGTTCCATATCAA
ACTACGATCTGTCAACTTAACATCATGGAAACTCTCCCATGCCTTGTCAA
TTAATTGACAACCTTCCTCCAATGTTTCCTGTGTTCGGAAGACAGCGGCA
TTATTTTGCATCACGCGTTGCATATTCAACCGAATTTTT
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