CX674980

Overview
NameCX674980
Unique NameCX674980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674980 vs. ExPASy Swiss-Prot
Match: Y2049_STAEQ (Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP2049 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 40/164 (24.39%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  151 KHGAKVCIADVQDNLGQQVCQSLGGEPDTFFCHCDVTKEEDVCSAVDLTVEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAAELGKYGIRVNCVSPYAVAT 642
            + GA + +    +    ++ Q L           DVT + ++   +   ++ FG +DI+VN+AG S +    I + ++ +++ + D+N+KG  H ++     ++ Q+ G II++ SV+G         Y  +K A+  + +++  EL + G++V  +SP  V T
Sbjct:   28 QQGASIVLVGRNEQRLNEIAQQLNTPAKVV--SADVTVKSNIDDMLKAVIDHFGHIDIVVNSAGQSLSS--KITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDT 187          
BLAST of CX674980 vs. ExPASy Swiss-Prot
Match: Y2036_STAES (Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2036 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 40/164 (24.39%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  151 KHGAKVCIADVQDNLGQQVCQSLGGEPDTFFCHCDVTKEEDVCSAVDLTVEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAAELGKYGIRVNCVSPYAVAT 642
            + GA + +    +    ++ Q L           DVT + ++   +   ++ FG +DI+VN+AG S +    I + ++ +++ + D+N+KG  H ++     ++ Q+ G II++ SV+G         Y  +K A+  + +++  EL + G++V  +SP  V T
Sbjct:   28 QQGASIVLVGRNEQRLNEIAQQLNTPAKVV--SADVTVKSNIDDMLKAVIDHFGHIDIVVNSAGQSLSS--KITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDT 187          
BLAST of CX674980 vs. ExPASy Swiss-Prot
Match: PGDH_BOVIN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bos taurus GN=HPGD PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 62/222 (27.93%), Postives = 96/222 (43.24%), Query Frame = 1
Query:  157 GAKVCIADVQDNLGQQVCQSLGG--EPD-TFFCHCDVTKEEDVCSAVDLTVEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQT---KGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKN--VAAELGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVGFRNFVARNANMQGTELTANDVANAVLFLASDEA 798
            GAKV + D     G +   +L    EP  T F  CDV  +E +       V+ FG LDI+VNNAG++              +EK   IN+  V  G       M  Q     G  I++ S+AG +       Y  SKH ++G  ++  +AA L   G+R+N + P  V T +  +   E+E      + +   +       G  L  + +AN ++ L  D+A
Sbjct:   29 GAKVALVDWNLEAGVKCKAALDEQFEPQKTLFIQCDVADQEQLRDTFRKVVDHFGKLDILVNNAGVNNE----------KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGININMSSLAGLMPVAQQPVYCASKHGIVGFTRSAAMAANLMNSGVRLNAICPGFVDTPILKS--IEKEENMGKYIEYMGPIKDMMKYYGI-LDPSMIANGLITLIEDDA 237          
BLAST of CX674980 vs. ExPASy Swiss-Prot
Match: ENTA_ECOLI (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase OS=Escherichia coli (strain K12) GN=entA PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 53/186 (28.49%), Postives = 83/186 (44.62%), Query Frame = 1
Query:  253 DVTKEEDVCSAVDLTVEKFGTLDIMVNNAGISGAPCPDIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAGAIGGLGPHAYTGSKHAVLGLNKNVAAELGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVGFRNFVARNANMQGTELTANDVANAVLFLASDEARYIS 810
            D  +   VC  +    E+   LD +VN AGI      D  +    ++++ F +NV G F+  +        Q  G I+++ S A     +G  AY  SK A+  L  +V  EL   G+R N VSP +  T +       ++  E  + GF         + G      ++AN +LFLASD A +I+
Sbjct:   55 DAAQVAQVCQRLLAETER---LDALVNAAGILRMGATD--QLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPL-GKIARPQEIANTILFLASDLASHIT 234          
BLAST of CX674980 vs. ExPASy Swiss-Prot
Match: DHB13_RAT (17-beta hydroxysteroid dehydrogenase 13 OS=Rattus norvegicus GN=Hsd17b13 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 53/176 (30.11%), Postives = 88/176 (50.00%), Query Frame = 1
Query:  145 FHKHGAKVCIADVQDNLGQQV---CQSLGGEPDTFFCHCDVTKEEDVCSAVDLTVEKFGTLDIMVNNAGISGAPCP-DIREADLSEFEKVFDINVKGVFHGMKHAARIMIPQTKGTIISICSVAG--AIGGLGPHAYTGSKHAVLGLNKNVAAEL---GKYGIRVNCVSPYAVATG 645
            F K  +++ + D+  +  ++    C+ LG     F   C  +   ++  +VD   ++ G ++I+VNNAG   A  P D+      E  K F++N+ G F  +K     M+ +  G I+++ SV G   I  L P  Y  SK A +G ++ + AEL   GK GI+ +C+ P  V TG
Sbjct:   56 FAKQKSRLVLWDISKHGVEETAAKCRKLGAVVHVFVVDC--SNRAEIYKSVDQVKKEVGDIEIVVNNAG---AIYPADLLSTKDEEITKTFEVNILGHFWIIKALLPSMLRRNSGHIVTVASVCGHRVIPYLIP--YCSSKFAAVGFHRALTAELDTLGKTGIKTSCLCPVFVNTG 224          
The following BLAST results are available for this feature:
BLAST of CX674980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
Y2049_STAEQ8.444e-1124.39Uncharacterized oxidoreductase SERP2049 OS=Staphyl... [more]
Y2036_STAES8.444e-1124.39Uncharacterized oxidoreductase SE_2036 OS=Staphylo... [more]
PGDH_BOVIN8.444e-1127.9315-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bo... [more]
ENTA_ECOLI8.444e-1128.492,3-dihydro-2,3-dihydroxybenzoate dehydrogenase OS... [more]
DHB13_RAT8.444e-1130.1117-beta hydroxysteroid dehydrogenase 13 OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_9H02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9H02-O3-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674980 ID=CX674980; Name=CX674980; organism=Citrus sinensis; type=EST; length=820bp
GGCAATAGTTTTATTGTGTGAAATGTTCTACGTCTTCCTAAATGGCCTTA
GACGTGTTTTCTTTTCCTAACATTTTGTTGGTATAATTATTTTGTTTTAC
TTATTGTTTTAATAATTTAGATGGTTATGAGCACTGTACGCCTATTCCAC
AAGCATGGTGCAAAAGTTTGCATTGCAGATGTGCAAGACAATCTTGGTCA
GCAGGTCTGTCAATCCCTTGGTGGTGAGCCAGACACTTTTTTTTGCCATT
GTGATGTCACAAAGGAGGAAGATGTTTGCTCTGCTGTTGACCTCACAGTC
GAAAAATTTGGCACACTTGATATCATGGTCAATAATGCTGGCATTTCAGG
GGCTCCTTGTCCTGACATCCGTGAGGCGGACTTATCAGAGTTTGAGAAGG
TATTTGACATAAATGTGAAGGGAGTTTTCCATGGAATGAAGCATGCAGCT
CGGATCATGATCCCACAAACTAAGGGCACTATCATATCAATCTGCAGTGT
TGCAGGTGCCATTGGTGGTCTTGGCCCACATGCCTATACGGGGTCCAAGC
ATGCCGTTTTGGGACTCAACAAGAATGTTGCCGCTGAGCTTGGAAAATAT
GGCATCCGCGTGAACTGTGTTTCTCCTTATGCTGTTGCAACAGGCTTGGC
TTTGGCTCACTTGCCTGAAGAGGAGAGGACAGAGGATGCCATGGTAGGTT
TCCGTAATTTTGTTGCAAGAAATGCTAACATGCAGGGCACGGAGTTGACA
GCTAATGATGTGGCTAACGCTGTTCTCTTCCTAGCAAGTGATGAAGCTAG
GTACATAAGTGGAACGAATC
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