CN186388

Overview
NameCN186388
Unique NameCN186388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 4.910e-47
Identity = 95/165 (57.58%), Postives = 121/165 (73.33%), Query Frame = -1
Query:  266 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 757
            IRD +PVV LENEL+YG  F    E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+IRP+D  TI ASV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDAP  R+ GADVPMPYA  LE  ++PQV+DI+ A K+
Sbjct:  191 IRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.840e-45
Identity = 94/165 (56.97%), Postives = 115/165 (69.70%), Query Frame = -1
Query:  266 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 757
            +RD +PV+ LENE+LYG  FPVS E     F LP G+AKI+R GKD+TI + S  V +SL AA+ LAK GI  EVINLR +RPLD  T+  SV KT  LVTVE G+P  GVGAEI A V E ++FGYLD P+ R+ G DVPMPYA  LE  A+PQ  D+V+  K+
Sbjct:  192 VRDDNPVICLENEILYGMKFPVSPEAQSPDFVLPFGQAKIQRPGKDITIVSLSIGVDVSLHAADELAKSGIDCEVINLRCVRPLDFQTVKDSVIKTKHLVTVESGWPNCGVGAEISARVTESDAFGYLDGPILRVTGVDVPMPYAQPLETAALPQPADVVKMVKK 356          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.337e-44
Identity = 94/166 (56.63%), Postives = 120/166 (72.29%), Query Frame = -1
Query:  263 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 757
            IRD +PVVFLENE+LYG+SFPV  EVL   F +PIGKAKIER G  VTI ++S+ V  SL+AA+ L   G+SAEVINLRS+RP D  +I  SV KT+ LV+VE G+P  G+G+EI A V+E + F  LDAP+ R+ G DVPMPY   LE  A+P  E +V+A K++
Sbjct:  183 IRDDNPVVFLENEILYGQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLEAIGVSAEVINLRSLRPFDFESIRQSVHKTHHLVSVETGWPFAGIGSEIAAQVMESDVFDQLDAPLLRVTGVDVPMPYTQTLEAAALPTAEHVVKAVKKS 348          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.132e-43
Identity = 91/170 (53.53%), Postives = 120/170 (70.59%), Query Frame = -1
Query:  248 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 757
            IRD +PV+FLENE+LYG SF V   +      +P G+AKI REG  VTI  FS  V L+L AA +L  + I  EVI+LR+I+PLD  TI  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+P+A NLE++A+P   D++ A K+ CY SV
Sbjct:  161 IRDDNPVIFLENEILYGHSFDVPETIEP----IPFGQAKILREGSSVTIVTFSIQVKLALDAANVLQNDNIDCEVIDLRTIKPLDTDTIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPFAVNLEKLALPSESDVIEAVKKVCYYSV 326          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.478e-43
Identity = 94/168 (55.95%), Postives = 117/168 (69.64%), Query Frame = -1
Query:  254 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYR 757
            IR  DPVVFLE ELLYG++F V        F LPIGKA+I REGKDVTI ++S  V  +L AAE LAKEGI AEVI+LR++RPLD+ TI  S+ KTNR+VTVE+G+P   + +EI A  +EE F  LDAPV R+  AD P PYA NLE+  +   E I+ A ++ CYR
Sbjct:  297 IRSDDPVVFLECELLYGKTFDVPKM---DDFVLPIGKARIIREGKDVTIVSYSIGVSFALTAAEALAKEGIDAEVIDLRTLRPLDKETILQSLAKTNRIVTVEDGWPVCSISSEIAAIAMEEGFDNLDAPVLRVTNADTPTPYAENLEKKGLVNPEAIIEAVRKVCYR 461          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.522e-43
Identity = 90/167 (53.89%), Postives = 119/167 (71.26%), Query Frame = -1
Query:  257 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY 757
            IRD +PV+FLENE+LYG SF +S  V      +P GKAK+ +EG  VTI  FS  V L+L AA IL  + I+ EVI+LR+I+PLD  TI  SV+KT RLV +EEG+   G+GA I A V++E+F YLDAPVE ++G DVP+PYA NLE++A+P   D++ A K+ CY
Sbjct:  161 IRDDNPVIFLENEILYGHSFDISENVEP----IPFGKAKVLKEGDSVTIVTFSIQVKLALDAANILQSDNINCEVIDLRTIKPLDIDTIIESVKKTGRLVVIEEGWFFAGIGATIAAIVMKEAFDYLDAPVEIVSGKDVPLPYAVNLEKLALPSEYDVINAVKKVCY 323          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.338e-43
Identity = 90/170 (52.94%), Postives = 118/170 (69.41%), Query Frame = -1
Query:  248 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 757
            IRD +PVVFLENE+LYG SF V   +      +P G+AKI REG  VTI  FS  V L+L AA  +  + I  EVI+LR+I+PLD  TI  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G D+P+PYA NLE +A+P   D++ A K+ CY S+
Sbjct:  161 IRDDNPVVFLENEILYGHSFDVPKTIEP----IPFGQAKILREGSSVTIVTFSIQVKLALDAANFVQNDNIDCEVIDLRTIKPLDTETIIESVKKTNRLVVVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDLPLPYAVNLETLALPSESDVIEAVKKVCYYSI 326          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.756e-42
Identity = 87/170 (51.18%), Postives = 121/170 (71.18%), Query Frame = -1
Query:  248 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 757
            IRD +PV+FLENE+LYG SF V  ++++    +P  KAKI +EG +VTI  FS  V L+L    IL  + I  E+I+LR+I+PLD  +I  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+PYA NLE++A+P   D++ A K+ CY S+
Sbjct:  161 IRDDNPVIFLENEILYGHSFDVP-DIIEP---IPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPLDTDSIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVCYYSI 326          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.384e-41
Identity = 86/170 (50.59%), Postives = 121/170 (71.18%), Query Frame = -1
Query:  248 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 757
            IRD +PV+FLENE+LYG SF V  ++++    +P  KAKI +EG +VTI  FS  V L+L    IL  + I  E+I+LR+I+PLD + I  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+PYA NLE++A+P   D++ A K+ CY ++
Sbjct:  161 IRDDNPVIFLENEILYGHSFDVP-DIIEP---IPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPLDTNMIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVCYYTI 326          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.933e-31
Identity = 77/164 (46.95%), Postives = 106/164 (64.63%), Query Frame = -1
Query:  266 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 757
            IRD DPV+FLE+  LY  SF    EV +  + +PIGKA I+REGKD+TI A+  +V  SLKAA  L KEGISAEV++LR+++PLD  TI  SV KT R + V+E   Q G+ A + A + E +   L+APV R+A  D   P+ A  E + +P  +D++  AK+
Sbjct:  162 IRDNDPVIFLEHLKLY-RSF--RQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPF-AQAESVWLPNFKDVIETAKK 321          
The following BLAST results are available for this feature:
BLAST of CN186388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
ODPB_HUMAN4.910e-4757.58Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ASCSU7.840e-4556.97Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CAEEL1.337e-4456.63Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICFE1.132e-4353.53Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYMMO1.478e-4355.95Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICBR2.522e-4353.89Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN7.338e-4352.94Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR4.756e-4251.18Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICTY1.384e-4150.59Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACST4.933e-3146.95Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186388 ID=CN186388; Name=CN186388; organism=Citrus sinensis; type=EST; length=757bp
AGTAAAACTTGTAGCAGTACATTGATAATCAAACAATAAACCTCTGGTTT
CTTGTTGATTTTCCACATTAACAAGAGAAAACTAAGCCACAAAATTTCCT
GCTGTCATCAACAATCTCCAATTATTTCATGATCAATTCCCCCAAAAAAG
TGTTGAGAACGGGGAAAATGTACAATCCCTCTATTGTTCCAGGATCTGAC
AAAGCTTCAGGGCAGAATCAGTTCATTTATGCTGCAGCAGCCATTGGCAC
AGATCTGTAGCATGCTCTCTTGGCAGCTCGGACAATATCTTCAACCTGTG
GGACAGCCATTCTCTCAAGATTGGCTGCATATGGCATTGGAACATCAGCT
CCAGCAATTCTCTCAACTGGTGCATCAAGATAACCGAAGCTTTCCTCAAT
AACGGATGCACAGATTTCGGCACCAACTCCATGCTGAGGGAACCCTTCTT
CGACTGTTACCAGTCTGTTAGTTTTCCTGACAGAAGCATTGATTGTGGAT
CTATCTAGTGGCCTAATTGACCGCAGATTGATAACCTCAGCACTTATTCC
TTCCTTTGCAAGTATCTCAGCCGCCTTGAGTGAAAGGCCCACAATTTTTG
AGAAAGCTGTAATAGTTACATCCTTTCCTTCTCTCTCAATTTTAGCTTTC
CCAATTGGAAGGCAAAAACTGGAATCAAGAACTTCAGCTGATACCGGGAA
TGACTCACCATATAACAACTCATTTTCAAGAAAAACAACAGGATCCGGAT
CCCTTAT
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