CN186388

Overview
NameCN186388
Unique NameCN186388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:698..1454. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 3.198e-30
Identity = 66/164 (40.24%), Postives = 103/164 (62.80%), Query Frame = -1
Query:  266 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 757
            IRD DPV+F E++ LYG    +  EV + ++ +P G+A I R+GKDV+I  +  +V  +L+AA  LAKEGI AE+++LR++ PLD  T+  SV  T RLV V+E  P+  +  +I A V +++FG L A +E +     P+P++  LE + +P    I  AA++
Sbjct:  172 IRDNDPVIFCEHKNLYG----LEGEVPEGAYAIPFGEANIVRDGKDVSIVTYGLMVHRALEAAATLAKEGIEAEIVDLRTLSPLDMDTVLESVENTGRLVVVDEASPRCNIATDISAQVAQQAFGALKAGIEMVCPPHTPVPFSPTLEDLYIPSAAQIAAAARK 331          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.617e-29
Identity = 62/166 (37.35%), Postives = 108/166 (65.06%), Query Frame = -1
Query:  260 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 757
            IR+ +PV+F E+ LLY     ++  +++  + L + KA++ R G D+TI  +S++    L+AA++L  +G   E+I++ S++PLD  TI+ SVRKT++++ VEE     G+GA + A+++E+ F YLDAP++ ++  DVP PY+  LE + V Q   I++A +  C
Sbjct:  162 IRNDNPVIFFEHVLLYN----LNENLIEQEYLLCLEKAEVVRPGNDITILTYSRMRHHVLQAAKVLVNKGYDPEIIDILSLKPLDMGTISLSVRKTHKVLIVEECMRTGGIGASLRAAILEDLFDYLDAPIQCLSSQDVPTPYSGPLEELTVIQPNQIIQAVEEMC 323          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.668e-28
Identity = 65/163 (39.88%), Postives = 102/163 (62.58%), Query Frame = -1
Query:  269 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 757
            IRD +PVVF E+ LLY     +  E+ +  + +P+ KA++ R+GKD+TI  +S++     +A  +L  +G   EV++L S++PLD  +I+ SV+KT+R++ VEE     G+GAE+ A + E  F  LDAPV R++  D+P PY  +LE+  V Q   I+ A K
Sbjct:  162 IRDNNPVVFFEHVLLYN----LQEEIPEDEYLIPLDKAEVVRKGKDITILTYSRMRHHVTEALPLLLNDGYDPEVLDLISLKPLDIDSISVSVKKTHRVLIVEECMKTAGIGAELIAQINEHLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPHQIIDAVK 320          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.534e-27
Identity = 69/163 (42.33%), Postives = 104/163 (63.80%), Query Frame = -1
Query:  269 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 757
            I+  DPVV+LE+  LY  SF    EV +  + + IGKA +++EG D+T+ ++  +V  SLKAAE L K+G S EVI+LR+++P+D  T+ ASV KT R V V+E   Q GVGA++ A + E +   L+AP+ R+A +D   P+    E + +P  +DI+  AK
Sbjct:  162 IQSNDPVVYLEHMKLY-RSF--REEVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEKDGYSVEVIDLRTVQPIDIDTLVASVEKTGRAVVVQEAQRQAGVGAQVAAELAERAILSLEAPIARVAASDTIYPF-TQAENVWLPNKKDIIEQAK 320          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.534e-27
Identity = 69/163 (42.33%), Postives = 104/163 (63.80%), Query Frame = -1
Query:  269 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 757
            I+  DPVV+LE+  LY  SF    EV +  + + IGKA +++EG D+T+ ++  +V  SLKAAE L K+G S EVI+LR+++P+D  T+ ASV KT R V V+E   Q GVGA++ A + E +   L+AP+ R+A +D   P+    E + +P  +DI+  AK
Sbjct:  162 IQSNDPVVYLEHMKLY-RSF--REEVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEKDGYSVEVIDLRTVQPIDIDTLVASVEKTGRAVVVQEAQRQAGVGAQVAAELAERAILSLEAPIARVAASDTIYPF-TQAENVWLPNKKDIIEQAK 320          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.534e-27
Identity = 67/163 (41.10%), Postives = 100/163 (61.35%), Query Frame = -1
Query:  269 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 757
            IRD +PVVF E+ LLY     +  E+    + LP+ K +  R+GKD+TI  +S++    ++A   L KEG   EVI+L S++PLD  +I+ SV+KT++++ VEE     G+GAE+ A + E  F  LDAPV R++  D+P PY  +LE+  V Q   IV + K
Sbjct:  162 IRDNNPVVFFEHVLLYN----LQEEIPQEEYFLPLNKVEFVRKGKDITILTYSRMRHHVIQALPALLKEGYDPEVIDLISLKPLDIDSISISVKKTHKVLIVEECMKTAGIGAELIAQINEYLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPSQIVDSVK 320          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.534e-27
Identity = 64/163 (39.26%), Postives = 100/163 (61.35%), Query Frame = -1
Query:  269 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 757
            IRD +PV+FLE+ LLY     +  E+    + LP+ KA++ REG DVTI  +S+++   ++A + L  +G++ EVI+L S++P+D  T+  SV KT++ + VEE     G+ AE+ A +   +F  LDAP+ R++  DVP PY   LE+  + Q   IV A K
Sbjct:  163 IRDNNPVLFLEHVLLYN----LKQEIPKQEYVLPLDKAQVVREGSDVTIITYSRMLHHVMQAVKQLVAQGMNPEVIDLISLKPIDLETLVTSVSKTHKAIIVEECMQTGGIAAEVMAQIYSHAFDELDAPIRRLSSKDVPTPYNGYLEQACLVQPTQIVEAVK 321          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.309e-27
Identity = 71/163 (43.56%), Postives = 101/163 (61.96%), Query Frame = -1
Query:  269 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 757
            IR  DPVV+LE+  LY  SF    EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  162 IRSNDPVVYLEHMKLY-RSF--REEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.309e-27
Identity = 71/163 (43.56%), Postives = 101/163 (61.96%), Query Frame = -1
Query:  269 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 757
            IR  DPVV+LE+  LY  SF    EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  162 IRSNDPVVYLEHMKLY-RSF--REEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.309e-27
Identity = 71/163 (43.56%), Postives = 101/163 (61.96%), Query Frame = -1
Query:  269 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 757
            IR  DPVV+LE+  LY  SF    EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  162 IRSNDPVVYLEHMKLY-RSF--REEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
The following BLAST results are available for this feature:
BLAST of CN186388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
ACOB_RALEH3.198e-3040.24Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_CHAGL4.617e-2937.35Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU6.668e-2839.88Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAES2.534e-2742.33Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ2.534e-2742.33Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE2.534e-2741.10Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME2.534e-2739.26Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAW3.309e-2743.56Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAU3.309e-2743.56Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAS3.309e-2743.56Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186388 ID=CN186388; Name=CN186388; organism=Citrus sinensis; type=EST; length=757bp
AGTAAAACTTGTAGCAGTACATTGATAATCAAACAATAAACCTCTGGTTT
CTTGTTGATTTTCCACATTAACAAGAGAAAACTAAGCCACAAAATTTCCT
GCTGTCATCAACAATCTCCAATTATTTCATGATCAATTCCCCCAAAAAAG
TGTTGAGAACGGGGAAAATGTACAATCCCTCTATTGTTCCAGGATCTGAC
AAAGCTTCAGGGCAGAATCAGTTCATTTATGCTGCAGCAGCCATTGGCAC
AGATCTGTAGCATGCTCTCTTGGCAGCTCGGACAATATCTTCAACCTGTG
GGACAGCCATTCTCTCAAGATTGGCTGCATATGGCATTGGAACATCAGCT
CCAGCAATTCTCTCAACTGGTGCATCAAGATAACCGAAGCTTTCCTCAAT
AACGGATGCACAGATTTCGGCACCAACTCCATGCTGAGGGAACCCTTCTT
CGACTGTTACCAGTCTGTTAGTTTTCCTGACAGAAGCATTGATTGTGGAT
CTATCTAGTGGCCTAATTGACCGCAGATTGATAACCTCAGCACTTATTCC
TTCCTTTGCAAGTATCTCAGCCGCCTTGAGTGAAAGGCCCACAATTTTTG
AGAAAGCTGTAATAGTTACATCCTTTCCTTCTCTCTCAATTTTAGCTTTC
CCAATTGGAAGGCAAAAACTGGAATCAAGAACTTCAGCTGATACCGGGAA
TGACTCACCATATAACAACTCATTTTCAAGAAAAACAACAGGATCCGGAT
CCCTTAT
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