CN186388
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.297e-20 Identity = 61/157 (38.85%), Postives = 90/157 (57.32%), Query Frame = -1 Query: 326 IRDPDPVVFLENELLYGESF------PVS-------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA 757 I + DPV+FLE + LY F PV+ ++V D + +P+ KA I R G +T+ + +V ++ AA+ + G+ AE+I+LRS+ PLD TI ASV+KT R V E G GAE+ + V E F +L+AP+ER+ G D P P+A Sbjct: 175 IENDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPASQVPDGYYKVPLDKAAIVRPGAALTVLTYGTMVYVAQAAAD---ETGLDAEIIDLRSLWPLDLETIVASVKKTGRCVIAHEATRTCGFGAELMSLVQEHCFHHLEAPIERVTGWDTPYPHA 328
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 4.054e-17 Identity = 56/145 (38.62%), Postives = 85/145 (58.62%), Query Frame = -1 Query: 329 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY 757 I D +P +F E ++LY + + EV + +P+ +A++ +EG DVT+ A+ V + + A +AKE G+S EVI+LR+I P D TI SV KT RL+ E G +EI ++V EE F L+AP+ R+ G D P P+ Sbjct: 229 IEDKNPCIFFEPKILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.628e-16 Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = -1 Query: 329 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY 757 I D +P +F E ++LY + +V + +P+ +A++ +EG DVT+ A+ V + + A + ++ G+S EVI+LR+I P D T+ SV KT RL+ E G +EI ++V EE F L+AP+ R+ G D P P+ Sbjct: 229 IEDKNPCIFFEPKILYRAAVE---QVPVEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAAMAQEKLGVSCEVIDLRTILPWDVDTVCKSVIKTGRLLVSHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16 Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = -1 Query: 329 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY 757 I D +P +F E ++LY + +V + +P+ +A++ +EG DVT+ A+ V + + A + ++ G+S EVI+LR+I P D T+ SV KT RL+ E G +EI ++V EE F L+AP+ R+ G D P P+ Sbjct: 227 IEDKNPCIFFEPKILYRAAVE---QVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16 Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = -1 Query: 329 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY 757 I D +P +F E ++LY + +V + +P+ +A++ +EG DVT+ A+ V + + A + ++ G+S EVI+LR+I P D T+ SV KT RL+ E G +EI ++V EE F L+AP+ R+ G D P P+ Sbjct: 227 IEDKNPCIFFEPKILYRAAVE---QVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.646e-16 Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = -1 Query: 326 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA 757 I PDPV+F E + LY E+ + +PIG+A + EG ++TI ++ + ++L + L +GI E+I+LR+I P D+ T+ SV+KT RL+ V E AEI SV EE F YL +R+ G D+ +P A Sbjct: 164 IESPDPVIFFEPKKLYRA---FRQEIPSDYYTVPIGEANLISEGSELTIVSYGPTMFDLINLVYSGELKDKGI--ELIDLRTISPWDKQTVFNSVKKTGRLLVVTEAVKSFTTSAEIITSVTEELFTYLKKAPQRVTGFDIVVPLA 304
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.906e-15 Identity = 52/146 (35.62%), Postives = 80/146 (54.79%), Query Frame = -1 Query: 326 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA 757 + PDPVVF E + LY E+ + +PIG+A + +G ++TI ++ + +++ L +GI E+I+LR+I P D+ T+ SV+KT RL+ V E EI ASV EE F YL A +R+ G D+ +P A Sbjct: 165 VESPDPVVFFEPKKLYRA---FRQEIPADYYTVPIGQANLISQGNNLTIVSYGPTMFDLINMVYGGELKDKGI--ELIDLRTISPWDKETVFNSVKKTGRLLVVTEAAKTFTTSGEIIASVTEELFSYLKAAPQRVTGWDIVVPLA 305
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: DXS_DESAP (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulforudis audaxviator (strain MP104C) GN=dxs PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.473e-15 Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = -1 Query: 323 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAA 661 LPIG+A++ REG D+T+ A +V ++KAAEILA+ GI A V+N R ++PLD I R+T RL+T+EE G G+ + ++ + G D V+ I DV + + A Sbjct: 487 LPIGRAEVLREGDDITLIAIGNMVPTAVKAAEILAERGIEASVVNARFVKPLDEKCICHYARRTGRLITLEENVIAGGFGSAVQELLVAK--GLTDVRVQLIGLPDVFIEHGA 597
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: DXS_THERP (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxs PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13 Identity = 57/147 (38.78%), Postives = 77/147 (52.38%), Query Frame = -1 Query: 284 LLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA--ANLERMAVPQVEDI 718 L Y V +L LPIG+A++ REG DV I A V + +AA+ILA+ GI A VIN R ++PLDRS I + R+ LVTVEE G G+ + ++ + L PV R+ AD +A A+L R A E I Sbjct: 464 LRYPRGSGVGVPMLGEPRVLPIGRAELLREGSDVAIVALGATVLPAERAADILAERGIRATVINARFVKPLDRSLILDAARECGCLVTVEEAQLAGGFGSAVLETLADAG---LLIPVLRLGLADRFFDHASQASLRRQAGIDAESI 607
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: DXS_SYNS9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9902) GN=dxs PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13 Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = -1 Query: 326 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA 661 LPIG+ ++ REG D+ I A+ +V +++ A +L G+SA VIN R +RPLD++ I+ R+ R+VT+EEG G GA + S+ + ++ PV RI D + +A Sbjct: 493 LPIGRGELLREGNDLVIVAYGSMVAPAMETAALLEASGLSASVINARFLRPLDQALIHPLARRVPRVVTMEEGTLSGGFGAAVLESLNDHD---INVPVLRIGIPDQLVDHA 601 The following BLAST results are available for this feature:
BLAST of CN186388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN186388 ID=CN186388; Name=CN186388; organism=Citrus sinensis; type=EST; length=757bpback to top |