CN186388

Overview
NameCN186388
Unique NameCN186388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:698..1454. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.297e-20
Identity = 61/157 (38.85%), Postives = 90/157 (57.32%), Query Frame = -1
Query:  326 IRDPDPVVFLENELLYGESF------PVS-------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA 757
            I + DPV+FLE + LY   F      PV+       ++V D  + +P+ KA I R G  +T+  +  +V ++  AA+   + G+ AE+I+LRS+ PLD  TI ASV+KT R V   E     G GAE+ + V E  F +L+AP+ER+ G D P P+A
Sbjct:  175 IENDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPASQVPDGYYKVPLDKAAIVRPGAALTVLTYGTMVYVAQAAAD---ETGLDAEIIDLRSLWPLDLETIVASVKKTGRCVIAHEATRTCGFGAELMSLVQEHCFHHLEAPIERVTGWDTPYPHA 328          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.054e-17
Identity = 56/145 (38.62%), Postives = 85/145 (58.62%), Query Frame = -1
Query:  329 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY 757
            I D +P +F E ++LY  +   + EV    + +P+ +A++ +EG DVT+ A+   V +  + A  +AKE  G+S EVI+LR+I P D  TI  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  229 IEDKNPCIFFEPKILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.628e-16
Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = -1
Query:  329 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY 757
            I D +P +F E ++LY  +     +V    + +P+ +A++ +EG DVT+ A+   V +  + A +  ++ G+S EVI+LR+I P D  T+  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  229 IEDKNPCIFFEPKILYRAAVE---QVPVEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAAMAQEKLGVSCEVIDLRTILPWDVDTVCKSVIKTGRLLVSHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16
Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = -1
Query:  329 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY 757
            I D +P +F E ++LY  +     +V    + +P+ +A++ +EG DVT+ A+   V +  + A +  ++ G+S EVI+LR+I P D  T+  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  227 IEDKNPCIFFEPKILYRAAVE---QVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16
Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = -1
Query:  329 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY 757
            I D +P +F E ++LY  +     +V    + +P+ +A++ +EG DVT+ A+   V +  + A +  ++ G+S EVI+LR+I P D  T+  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  227 IEDKNPCIFFEPKILYRAAVE---QVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.646e-16
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = -1
Query:  326 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA 757
            I  PDPV+F E + LY        E+    + +PIG+A +  EG ++TI ++   +   ++L  +  L  +GI  E+I+LR+I P D+ T+  SV+KT RL+ V E        AEI  SV EE F YL    +R+ G D+ +P A
Sbjct:  164 IESPDPVIFFEPKKLYRA---FRQEIPSDYYTVPIGEANLISEGSELTIVSYGPTMFDLINLVYSGELKDKGI--ELIDLRTISPWDKQTVFNSVKKTGRLLVVTEAVKSFTTSAEIITSVTEELFTYLKKAPQRVTGFDIVVPLA 304          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.906e-15
Identity = 52/146 (35.62%), Postives = 80/146 (54.79%), Query Frame = -1
Query:  326 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA 757
            +  PDPVVF E + LY        E+    + +PIG+A +  +G ++TI ++   +   +++     L  +GI  E+I+LR+I P D+ T+  SV+KT RL+ V E         EI ASV EE F YL A  +R+ G D+ +P A
Sbjct:  165 VESPDPVVFFEPKKLYRA---FRQEIPADYYTVPIGQANLISQGNNLTIVSYGPTMFDLINMVYGGELKDKGI--ELIDLRTISPWDKETVFNSVKKTGRLLVVTEAAKTFTTSGEIIASVTEELFSYLKAAPQRVTGWDIVVPLA 305          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: DXS_DESAP (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulforudis audaxviator (strain MP104C) GN=dxs PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.473e-15
Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = -1
Query:  323 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAA 661
            LPIG+A++ REG D+T+ A   +V  ++KAAEILA+ GI A V+N R ++PLD   I    R+T RL+T+EE     G G+ +   ++ +  G  D  V+ I   DV + + A
Sbjct:  487 LPIGRAEVLREGDDITLIAIGNMVPTAVKAAEILAERGIEASVVNARFVKPLDEKCICHYARRTGRLITLEENVIAGGFGSAVQELLVAK--GLTDVRVQLIGLPDVFIEHGA 597          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: DXS_THERP (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 57/147 (38.78%), Postives = 77/147 (52.38%), Query Frame = -1
Query:  284 LLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA--ANLERMAVPQVEDI 718
            L Y     V   +L     LPIG+A++ REG DV I A    V  + +AA+ILA+ GI A VIN R ++PLDRS I  + R+   LVTVEE     G G+ +  ++ +     L  PV R+  AD    +A  A+L R A    E I
Sbjct:  464 LRYPRGSGVGVPMLGEPRVLPIGRAELLREGSDVAIVALGATVLPAERAADILAERGIRATVINARFVKPLDRSLILDAARECGCLVTVEEAQLAGGFGSAVLETLADAG---LLIPVLRLGLADRFFDHASQASLRRQAGIDAESI 607          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: DXS_SYNS9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9902) GN=dxs PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  326 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYA 661
            LPIG+ ++ REG D+ I A+  +V  +++ A +L   G+SA VIN R +RPLD++ I+   R+  R+VT+EEG    G GA +  S+ +     ++ PV RI   D  + +A
Sbjct:  493 LPIGRGELLREGNDLVIVAYGSMVAPAMETAALLEASGLSASVINARFLRPLDQALIHPLARRVPRVVTMEEGTLSGGFGAAVLESLNDHD---INVPVLRIGIPDQLVDHA 601          
The following BLAST results are available for this feature:
BLAST of CN186388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
ODBB_PSEAE2.297e-2038.852-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODBB_HUMAN4.054e-1738.622-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_BOVIN2.628e-1635.422-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_RAT3.432e-1635.422-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE3.432e-1635.422-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_MYCGE7.646e-1636.30Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCPN2.906e-1535.62Pyruvate dehydrogenase E1 component subunit beta O... [more]
DXS_DESAP6.473e-1539.821-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
DXS_THERP1.221e-1338.781-deoxy-D-xylulose-5-phosphate synthase OS=Thermom... [more]
DXS_SYNS92.082e-1337.501-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186388 ID=CN186388; Name=CN186388; organism=Citrus sinensis; type=EST; length=757bp
AGTAAAACTTGTAGCAGTACATTGATAATCAAACAATAAACCTCTGGTTT
CTTGTTGATTTTCCACATTAACAAGAGAAAACTAAGCCACAAAATTTCCT
GCTGTCATCAACAATCTCCAATTATTTCATGATCAATTCCCCCAAAAAAG
TGTTGAGAACGGGGAAAATGTACAATCCCTCTATTGTTCCAGGATCTGAC
AAAGCTTCAGGGCAGAATCAGTTCATTTATGCTGCAGCAGCCATTGGCAC
AGATCTGTAGCATGCTCTCTTGGCAGCTCGGACAATATCTTCAACCTGTG
GGACAGCCATTCTCTCAAGATTGGCTGCATATGGCATTGGAACATCAGCT
CCAGCAATTCTCTCAACTGGTGCATCAAGATAACCGAAGCTTTCCTCAAT
AACGGATGCACAGATTTCGGCACCAACTCCATGCTGAGGGAACCCTTCTT
CGACTGTTACCAGTCTGTTAGTTTTCCTGACAGAAGCATTGATTGTGGAT
CTATCTAGTGGCCTAATTGACCGCAGATTGATAACCTCAGCACTTATTCC
TTCCTTTGCAAGTATCTCAGCCGCCTTGAGTGAAAGGCCCACAATTTTTG
AGAAAGCTGTAATAGTTACATCCTTTCCTTCTCTCTCAATTTTAGCTTTC
CCAATTGGAAGGCAAAAACTGGAATCAAGAACTTCAGCTGATACCGGGAA
TGACTCACCATATAACAACTCATTTTCAAGAAAAACAACAGGATCCGGAT
CCCTTAT
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