CN186385

Overview
NameCN186385
Unique NameCN186385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1711 contig Csv1_Contig1711:14..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_STAAN (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain N315) GN=pdhA PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.770e-35
Identity = 78/180 (43.33%), Postives = 114/180 (63.33%), Query Frame = -1
Query:  235 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS-TSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 771
            NFAA  +AP +F+ +NN +AIST  S+Q  ++ +  K  A GI  I+VDG DALAVY A + AR+ A++ + P L+E +TYR G H+   DD T+YRT DE   W+ ++ P+ RFR ++E +G W+E +E E+    K  +  AI+ A+ TEK  +T L   +Y+  P NLAEQ +  KE
Sbjct:  188 NFAAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMPQNLAEQYEIYKE 366          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_STAAM (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhA PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.770e-35
Identity = 78/180 (43.33%), Postives = 114/180 (63.33%), Query Frame = -1
Query:  235 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS-TSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 771
            NFAA  +AP +F+ +NN +AIST  S+Q  ++ +  K  A GI  I+VDG DALAVY A + AR+ A++ + P L+E +TYR G H+   DD T+YRT DE   W+ ++ P+ RFR ++E +G W+E +E E+    K  +  AI+ A+ TEK  +T L   +Y+  P NLAEQ +  KE
Sbjct:  188 NFAAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMPQNLAEQYEIYKE 366          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_STAAC (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain COL) GN=pdhA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.770e-35
Identity = 78/180 (43.33%), Postives = 114/180 (63.33%), Query Frame = -1
Query:  235 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS-TSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 771
            NFAA  +AP +F+ +NN +AIST  S+Q  ++ +  K  A GI  I+VDG DALAVY A + AR+ A++ + P L+E +TYR G H+   DD T+YRT DE   W+ ++ P+ RFR ++E +G W+E +E E+    K  +  AI+ A+ TEK  +T L   +Y+  P NLAEQ +  KE
Sbjct:  188 NFAAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMPQNLAEQYEIYKE 366          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_STAES (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.285e-34
Identity = 77/180 (42.78%), Postives = 114/180 (63.33%), Query Frame = -1
Query:  235 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS-TSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 771
            NFA+  +AP +F+ +NN +AIST  S+Q  ++ +  K  + GI  I+VDG DALAVY A   ARE A++ + P ++E LTYR G H+   DD T+YRT DE   W+ ++ P+ RFR ++E +G W+E +E E+    K ++  AI+ A+ TEK  +T L   +Y+  P NLAEQ +  KE
Sbjct:  188 NFASAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAISVGIPGIQVDGMDALAVYQATLEARERAVAGEGPTVIETLTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKYLEAKGLWNEDKENEVVERAKSEIKAAIKEADNTEKQTVTSLMDIMYEEMPQNLAEQYEIYKE 366          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_STAEQ (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.285e-34
Identity = 77/180 (42.78%), Postives = 114/180 (63.33%), Query Frame = -1
Query:  235 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS-TSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 771
            NFA+  +AP +F+ +NN +AIST  S+Q  ++ +  K  + GI  I+VDG DALAVY A   ARE A++ + P ++E LTYR G H+   DD T+YRT DE   W+ ++ P+ RFR ++E +G W+E +E E+    K ++  AI+ A+ TEK  +T L   +Y+  P NLAEQ +  KE
Sbjct:  188 NFASAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAISVGIPGIQVDGMDALAVYQATLEARERAVAGEGPTVIETLTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKYLEAKGLWNEDKENEVVERAKSEIKAAIKEADNTEKQTVTSLMDIMYEEMPQNLAEQYEIYKE 366          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_BACST (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus stearothermophilus GN=pdhA PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.052e-32
Identity = 76/180 (42.22%), Postives = 116/180 (64.44%), Query Frame = -1
Query:  235 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS-DDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 771
            NFA   +AP +F+ +NN +AIST + +Q  +  +  K  A GI  I+VDG D LAVY AV+AARE AI+ + P L+E L +R G H+ S DD T+YR+  E+E    ++ P+ RFR ++E +G WSE+EE  +    K+++ +AI+ A++T K  +T+L S +++  P NL EQ +  KE
Sbjct:  187 NFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRS-KELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKE 365          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_BACSU (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus subtilis GN=pdhA PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 3.501e-32
Identity = 73/174 (41.95%), Postives = 110/174 (63.22%), Query Frame = -1
Query:  253 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS-DDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQ 771
            NFA   +AP +F+ +NN +AIST + +Q  ++ I  K  A GI  ++VDG D LAVY A   ARE AI+ + P L+E LT+R G H+ + DD TKYRT +    W+ ++ P+ RFR ++E +G WSE+EE ++    K+++ QAI+ A+   K  +T+L   +Y+  P NL EQ
Sbjct:  189 NFAGAYKAPAIFVVQNNRYAISTPVEKQSAAETIAQKAVAAGIVGVQVDGMDPLAVYAATAEARERAINGEGPTLIETLTFRYGPHTMAGDDPTKYRTKEIENEWE-QKDPLVRFRAFLENKGLWSEEEEAKVIEDAKEEIKQAIKKADAEPKQKVTDLMKIMYEKMPHNLEEQ 361          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_BACCE (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus cereus GN=pdhA PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 7.799e-32
Identity = 73/180 (40.56%), Postives = 110/180 (61.11%), Query Frame = -1
Query:  235 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS-TSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 771
            NFA   +AP +F+ +NN +AIST + +Q  +  +  K  A GI  I+VDG D LAVY A   ARE A++ + P L+E LT+R G H+   DD T+YRT D    W+ ++ P+ RFR ++E +G WS++ E ++    K+ + QAI  A++  K  +T+L   +Y+  P NLAEQ +  KE
Sbjct:  189 NFAGAFKAPAIFVVQNNRYAISTPVEKQSAAKTVAQKAVAAGIYGIQVDGMDPLAVYAATAFARERAVNGEGPTLIETLTFRYGPHTMAGDDPTRYRTKDIENEWE-QKDPIVRFRAFLENKGLWSQEVEEKVIEEAKEDIKQAIAKADQAPKQKVTDLMEIMYEKMPYNLAEQYEIYKE 367          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODBA_THET2 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.622e-31
Identity = 72/179 (40.22%), Postives = 106/179 (59.22%), Query Frame = -1
Query:  235 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 771
            NFAAV  AP VF+C NN +AIS +   Q  S  I  K  A+GI    VDG D LA Y  V+ A E A   + P LVE   YR G HS++DD ++YR  +E+ +W+ ++ P+ RFR ++E +G W+E+ E ++R  I+ +L + ++ AE+        +F+DV+   P +L  QE  LKE
Sbjct:  188 NFAAVQGAPAVFVCENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFADVFAEKPWHLLRQEALLKE 365          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODBA_THET8 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0229 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.533e-30
Identity = 72/179 (40.22%), Postives = 104/179 (58.10%), Query Frame = -1
Query:  235 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 771
            NFAAV  AP VFI  NN +AIS +   Q  S  I  K  A+GI    VDG D LA Y  V+ A E A   + P LVE   YR G HS++DD ++YR  +E+ +W+ ++ P+ RFR ++E +G W+E+ E ++R  I+ +L + ++ AE+        +F DV+   P +L  QE  LKE
Sbjct:  188 NFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKE 365          
The following BLAST results are available for this feature:
BLAST of CN186385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODPA_STAAN5.770e-3543.33Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAM5.770e-3543.33Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAC5.770e-3543.33Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAES1.285e-3442.78Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAEQ1.285e-3442.78Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_BACST2.052e-3242.22Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_BACSU3.501e-3241.95Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_BACCE7.799e-3240.56Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODBA_THET28.622e-3140.222-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODBA_THET89.533e-3040.222-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186385 ID=CN186385; Name=CN186385; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTTTTTTTTTTGAACTATAATTACGTATAGATTGCTTTATTACT
ATCATAATGTACATGGCATGTAGAAACTTATTGACGCTACATTTTTCATT
TATATGGAGTTTTCAGGAGTTTTATTTTTTATCTTTCCGTTTCCCCCCTT
TATTCTACACATTTTATTGAAGTAGCCACGTGAAATCTATACAGGAACAT
CAGTGGGATAGTCTTGTGGATATTTTTGGATAATTTCTTTCAGCTGTTTC
TCTTGCTCAGCAAGGTTTGATGGGGGAACATCATATACATCGGAGAACAG
TTCTGTAATCGCCGGCTTTTCTGTTTTCTCTGCAACTTGAATTGCTTGCA
ACAACTGTTTCTTGATGCTACTTCGAAGCTCGGTTTCTTCTTGCTCACTC
CACCAGCCTTGCCTTTCCACCCAATTCCTAAATCTATTGACAGGACTTCG
TTCTGTTTTCCAGTACTCGATTTCATCAAGTGTTCGGTATTTGGTGGAAT
CATCCGAGGTTGAGTGATGTCCTACTCGATATGTAAGGGCCTCTACTAAC
ACAGGTCTCTTTTCACTGATAGCCATTTCACGAGCTGCCTGAACTGCGGT
ATAAACAGCAAGTGCATCATTTCCATCTACTCGTATGCTTCGGATACCAT
ATGCACGACCCTTAACAACAATACCATCGCTTCGAAATTGTTCTGATATA
TTGGTACTAATGGCCCAGCCATTGTTGCGACAGATGAAGACGACAGGGGC
TTCCATAACTGCTGCAAAGTT
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