CN186385

Overview
NameCN186385
Unique NameCN186385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1711 contig Csv1_Contig1711:14..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_CAEEL (Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.758e-18
Identity = 52/168 (30.95%), Postives = 87/168 (51.79%), Query Frame = -1
Query:  268 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPS 771
            N A + + PV+F+C NNG+ + T       S     +G    +  I VDG D LAV  A + A+E   S K P+++E  TYR   HS SD  T YRT +EI+  +  R P+  F++ +      +E+E   +   ++K++ +A+++A          L++D+Y   P+
Sbjct:  203 NMAKLWDLPVLFVCENNGFGMGTTAERSSASTEYYTRGDY--VPGIWVDGMDILAVREATKWAKEYCDSGKGPLMMEMATYRYHGHSMSDPGTSYRTREEIQEVRKTRDPITGFKDRIITSSLATEEELKAIDKEVRKEVDEALKIATSDGVLPPEALYADIYHNTPA 368          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA1_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At1g59900 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.908e-18
Identity = 54/163 (33.13%), Postives = 88/163 (53.99%), Query Frame = -1
Query:  283 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 771
            N +A+ + P + +C NN + + T      +S     +G    +  ++VDG DA AV  A + A++ A+ EK P+++E  TYR   HS SD  + YRT DEI   + ER P+ R +  V      +E+E  ++   I+K++  AI  A+    P  +ELF++VY
Sbjct:  209 NISALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDAFAVKQACKFAKQHAL-EKGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEIRKEVDDAIAKAKDCPMPEPSELFTNVY 368          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_PEA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.371e-18
Identity = 53/163 (32.52%), Postives = 89/163 (54.60%), Query Frame = -1
Query:  283 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 771
            N +A+ + P + +C NN + + T      +S     +G    +  ++VDG DALAV  A + A+E A+ +  P+++E  TYR   HS SD  + YRT DEI   + ER P+ R R  +      +E+E  +    ++K++ +AI  A+ +  P  ++LFS+VY
Sbjct:  217 NISALWDLPAILVCENNHYGMGTATWRSAKSPAYFKRGDY--VPGLKVDGMDALAVKQACKFAKEHAL-KNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLSHDIATEKELKDTEKEVRKEVDEAIAKAKDSPMPDPSDLFSNVY 376          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_RICFE (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia felis GN=pdhA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.428e-17
Identity = 50/163 (30.67%), Postives = 91/163 (55.83%), Query Frame = -1
Query:  283 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 771
            N AA+   PVV+I  NN +++ T+++       +  KG ++GI+  ++DG D   +Y   + A E       P+++E  TYR   HS SD + KYR+ +E+E +K ER P+   R  +    + +E +  E+  S+K+ + +A++ +E +  P   EL+++VY
Sbjct:  165 NMAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGESFGIKGFQLDGMDFEEMYNGAKQAAEYVRENSFPLILEVKTYRYRGHSMSDPA-KYRSKEEVEQYK-ERDPLVIIRKTILDNKYATEADLKEIEQSVKEIVKEAVKFSENSPLPDEGELYTEVY 325          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA2_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=IAR4 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.865e-17
Identity = 55/180 (30.56%), Postives = 95/180 (52.78%), Query Frame = -1
Query:  238 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY--DVPPSNLAEQEKQLK 771
            N +A+ + P + +C NN + + T      +S     +G    +  ++VDG DALAV  A + A+E A+ +  P+++E  TYR   HS SD  + YRT DEI   +  R P+ R R  +      +E+E  ++   I+K++  A+  A+++  P  +ELF+++Y  D    +     K+LK
Sbjct:  213 NISALWDLPAILVCENNHYGMGTATWRSAKSPAYFKRGDY--VPGLKVDGMDALAVKQACKFAKEHAL-KNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQVRDPIERVRKLLLTHDIATEKELKDMEKEIRKEVDDAVAQAKESPIPDASELFTNMYVKDCGVESFGADRKELK 389          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_YEAST (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=PDA1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.436e-17
Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = -1
Query:  283 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKP--AITELFSDVY 771
            N A +   PVVF C NN + + T  S          +G+   I  ++V+G D LAVY A + A++  +S K P+++E  TYR G HS SD  T YRT DEI++ +++  P+   +  +   G  +E E      S +K + + +++A+    P   ++ LF DVY
Sbjct:  229 NMAKLWNLPVVFCCENNKYGMGTAASRSSAMTEYFKRGQY--IPGLKVNGMDILAVYQASKFAKDWCLSGKGPLVLEYETYRYGGHSMSDPGTTYRTRDEIQHMRSKNDPIAGLKMHLIDLGIATEAEVKAYDKSARKYVDEQVELADAAPPPEAKLSILFEDVY 391          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_ZYMMO (Pyruvate dehydrogenase E1 component subunit alpha OS=Zymomonas mobilis GN=pdhA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.154e-17
Identity = 52/162 (32.10%), Postives = 87/162 (53.70%), Query Frame = -1
Query:  286 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDV 771
            N AA+ + PV+F+  NNG+A+ T+I        +  +G  +GI ++ VDG D L V  A   A +   + K P+++E  TYR   HS SD + +YR+ +E+   K    P++  +  +   G   E E  +L   I++Q+ +A   AEK   PA  EL++++
Sbjct:  190 NMAALWKLPVIFVIENNGYAMGTSIQRANAHTALSERGAGFGIPALVVDGMDVLEVRGAATVAVDWVQAGKGPIILEMKTYRYRGHSMSDPA-RYRSREEVNDMKENHDPLDNLKKDLFAAG-VPEAELVKLDEDIRQQVKEAADFAEKAPLPADEELYTNI 349          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ACOA_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha OS=Bacillus subtilis GN=acoA PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.086e-17
Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -1
Query:  283 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 771
            N AAV   PVVF+  NNG+  +T        D I  +  AY +  + VDG D LAVY A + A E A +   P L+E +TYR   H   D  T Y+T DE      E+  +  F+N++ ++   ++  + E R  + + + +A+  +E +  P  +EL +DVY
Sbjct:  166 NLAAVWNLPVVFVAENNGYGEATPFEYASACDSIADRAAAYNMPGVTVDGKDILAVYQAAEEAIERARNGGGPSLIECMTYRNYGHFEGDAQT-YKTKDERVEHLEEKDAIQGFKNYLLKETDANKLSDIEQR--VSESIEKAVSFSEDSPYPKDSELLTDVY 325          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPAT_RAT (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Rattus norvegicus GN=Pdha2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.255e-17
Identity = 56/179 (31.28%), Postives = 91/179 (50.84%), Query Frame = -1
Query:  238 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY-DVPPSNLAEQEKQLK 771
            N +A+ + P VFIC NN + + T I     S     KG  + I  +RV+G D L+V  A + A +   S K P+++E  TYR   HS SD    YRT +E++  +++  P+   R  +      S +E  E+ + +KK++ +A Q A    +P + +L + +Y   PP  +    K LK
Sbjct:  210 NMSALWKLPCVFICENNRYGMGTAIERSAASTDYHKKG--FVIPGLRVNGMDILSVREATKFAADHCRSGKGPIVMELQTYRYHGHSMSDPGISYRTREEVQNVRSKSDPIMLLRERMISNNLSSVEELKEIDADVKKEVEEAAQFATTDPEPPLEDLANYLYHQNPPFEVRGAHKWLK 386          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_RICTY (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia typhi GN=pdhA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 48/163 (29.45%), Postives = 89/163 (54.60%), Query Frame = -1
Query:  283 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 771
            N A++   PVV+I  NN +++ T++S       +  KG ++GIR  ++DG D   +Y   +   E       PV++E  TYR   HS SD + KYR+ +E+  +K ER  + R R  +    + +E++   +  S+++ +  A++ +E +  P+  EL++D+Y
Sbjct:  165 NMASLWGLPVVYIIENNEYSMGTSVSRSTFMRDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDPA-KYRSKEEVAKYK-ERDTLVRIRQIILDNKYATEEDLKAIERSVQEVIKVAVEFSENSPLPSEDELYTDIY 325          
The following BLAST results are available for this feature:
BLAST of CN186385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODPA_CAEEL3.758e-1830.95Probable pyruvate dehydrogenase E1 component subun... [more]
ODPA1_ARATH4.908e-1833.13Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA_PEA8.371e-1832.52Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_RICFE1.428e-1730.67Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA2_ARATH1.865e-1730.56Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA_YEAST2.436e-1732.73Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_ZYMMO4.154e-1732.10Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ACOA_BACSU7.086e-1733.13Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPAT_RAT9.255e-1731.28Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_RICTY1.209e-1629.45Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186385 ID=CN186385; Name=CN186385; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTTTTTTTTTTGAACTATAATTACGTATAGATTGCTTTATTACT
ATCATAATGTACATGGCATGTAGAAACTTATTGACGCTACATTTTTCATT
TATATGGAGTTTTCAGGAGTTTTATTTTTTATCTTTCCGTTTCCCCCCTT
TATTCTACACATTTTATTGAAGTAGCCACGTGAAATCTATACAGGAACAT
CAGTGGGATAGTCTTGTGGATATTTTTGGATAATTTCTTTCAGCTGTTTC
TCTTGCTCAGCAAGGTTTGATGGGGGAACATCATATACATCGGAGAACAG
TTCTGTAATCGCCGGCTTTTCTGTTTTCTCTGCAACTTGAATTGCTTGCA
ACAACTGTTTCTTGATGCTACTTCGAAGCTCGGTTTCTTCTTGCTCACTC
CACCAGCCTTGCCTTTCCACCCAATTCCTAAATCTATTGACAGGACTTCG
TTCTGTTTTCCAGTACTCGATTTCATCAAGTGTTCGGTATTTGGTGGAAT
CATCCGAGGTTGAGTGATGTCCTACTCGATATGTAAGGGCCTCTACTAAC
ACAGGTCTCTTTTCACTGATAGCCATTTCACGAGCTGCCTGAACTGCGGT
ATAAACAGCAAGTGCATCATTTCCATCTACTCGTATGCTTCGGATACCAT
ATGCACGACCCTTAACAACAATACCATCGCTTCGAAATTGTTCTGATATA
TTGGTACTAATGGCCCAGCCATTGTTGCGACAGATGAAGACGACAGGGGC
TTCCATAACTGCTGCAAAGTT
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