CN186385

Overview
NameCN186385
Unique NameCN186385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1711 contig Csv1_Contig1711:14..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_RAT (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Rattus norvegicus GN=Pdha1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 52/167 (31.14%), Postives = 82/167 (49.10%), Query Frame = -1
Query:  271 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPP 771
            N AA+ + P +FIC NN + + T++     S     +G    I  +RVDG D L V  A + A     S K P+L+E  TYR   HS SD    YRT +EI+  +++  P+   ++ +      S +E  E+   ++K++  A Q A    +P + EL   +Y   P
Sbjct:  209 NMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 373          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_PORPU (Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra purpurea GN=pdhA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 53/158 (33.54%), Postives = 80/158 (50.63%), Query Frame = -1
Query:  298 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITEL 771
            N A + + P++F+  NN WAI            I  K  A+G+  I VDG D LAV    + A E A   + P L+EALTYR   HS +D   + R+  E E W   R P+ + +  +      S  E  +++SS+K  L Q+++ A  + +P I+EL
Sbjct:  181 NMAVLWKLPIIFVVENNQWAIGMAHHRSSSIPEIHKKAEAFGLPGIEVDGMDVLAVRQVAEKAVERARQGQGPTLIEALTYRFRGHSLADPD-ELRSRQEKEAW-VARDPIKKLKKHILDNQIASSDELNDIQSSVKIDLEQSVEFAMSSPEPNISEL 336          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_PONAB (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Pongo abelii GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 52/167 (31.14%), Postives = 82/167 (49.10%), Query Frame = -1
Query:  271 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPP 771
            N AA+ + P +FIC NN + + T++     S     +G    I  +RVDG D L V  A + A     S K P+L+E  TYR   HS SD    YRT +EI+  +++  P+   ++ +      S +E  E+   ++K++  A Q A    +P + EL   +Y   P
Sbjct:  209 NMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 373          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_MOUSE (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Mus musculus GN=Pdha1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 52/167 (31.14%), Postives = 82/167 (49.10%), Query Frame = -1
Query:  271 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPP 771
            N AA+ + P +FIC NN + + T++     S     +G    I  +RVDG D L V  A + A     S K P+L+E  TYR   HS SD    YRT +EI+  +++  P+   ++ +      S +E  E+   ++K++  A Q A    +P + EL   +Y   P
Sbjct:  209 NMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 373          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_MACFA (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Macaca fascicularis GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 52/167 (31.14%), Postives = 82/167 (49.10%), Query Frame = -1
Query:  271 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPP 771
            N AA+ + P +FIC NN + + T++     S     +G    I  +RVDG D L V  A + A     S K P+L+E  TYR   HS SD    YRT +EI+  +++  P+   ++ +      S +E  E+   ++K++  A Q A    +P + EL   +Y   P
Sbjct:  209 NMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 373          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_KLULA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Kluyveromyces lactis GN=PDA1 PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 55/181 (30.39%), Postives = 92/181 (50.83%), Query Frame = -1
Query:  235 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKP--AITELFSDVYDVPPSNLAEQEKQLKE 771
            N A +   P VF C NN + + T  +          +G+   I  ++V+G D LAVY A + A++  +S   P+++E  TYR G HS SD  T YRT DEI++ +++  P+   +  +   G  +E E      + +K + + +++A+    P   ++ LF DVY VP S       +L+E
Sbjct:  221 NMAKLWNLPAVFCCENNKYGMGTAAARSSAMTEYFKRGQY--IPGLKVNGMDILAVYQASKFAKDWTVSGNGPIVLEYETYRYGGHSMSDPGTTYRTRDEIQHMRSKNDPIAGLKMHLLELGIATEDEIKAYDKAARKYVDEQVELADAAPAPEAKMSILFEDVY-VPGSETPTLRGRLQE 398          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_HUMAN (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Homo sapiens GN=PDHA1 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 52/167 (31.14%), Postives = 82/167 (49.10%), Query Frame = -1
Query:  271 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPP 771
            N AA+ + P +FIC NN + + T++     S     +G    I  +RVDG D L V  A + A     S K P+L+E  TYR   HS SD    YRT +EI+  +++  P+   ++ +      S +E  E+   ++K++  A Q A    +P + EL   +Y   P
Sbjct:  209 NMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 373          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_SOLTU (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.579e-16
Identity = 53/163 (32.52%), Postives = 86/163 (52.76%), Query Frame = -1
Query:  283 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 771
            N AA+ + P + +C NN + + T      +S     +G    +  +RVDG D  AV  A   A++ A+ +  P+++E  TYR   HS SD  + YRT DEI   + ER PV R R+ +      +E E  ++    +K + +AI  A+++  P  +ELF++VY
Sbjct:  211 NMAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDY--VPGLRVDGMDVFAVKQACTFAKQHAL-KNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPVERIRSLILAHNIATEAELKDIEKENRKVVDEAIAKAKESPMPDPSELFTNVY 370          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_RICPR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia prowazekii GN=pdhA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 47/163 (28.83%), Postives = 89/163 (54.60%), Query Frame = -1
Query:  283 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 771
            N A++   P+V+I  NN +++ T+++       +  KG ++GIR  ++DG D   +Y   +   E       PV++E  TYR   HS SD + KYR+ +E+E +K ER  + R R  +    + +E +   +  S+++ +  A++ +E +  PA  EL++++Y
Sbjct:  165 NMASLWGLPIVYIIENNEYSMGTSVARSTFMCDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDPA-KYRSKEEVEKYK-ERDTLVRIREIILDNKYATEADLKAIEQSVREIIKVAVEFSENSPLPAEDELYTEIY 325          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_PIG (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (Fragment) OS=Sus scrofa GN=PDHA1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 55/179 (30.73%), Postives = 88/179 (49.16%), Query Frame = -1
Query:  238 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY-DVPPSNLAEQEKQLK 771
            N AA+ + P VFIC NN + + T++     S     +G    I  +RVDG D L V  A + A     S K P+L+E  TYR   HS SD    YRT +EI+  +++  P+   ++ +      S +E  E+   ++K++  A Q A    +P + EL   +Y + PP  +    + +K
Sbjct:  208 NMAALWKLPCVFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYCNDPPFEVRGANQWIK 384          
The following BLAST results are available for this feature:
BLAST of CN186385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODPA_RAT1.209e-1631.14Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_PORPU1.209e-1633.54Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_PONAB1.209e-1631.14Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_MOUSE1.209e-1631.14Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_MACFA1.209e-1631.14Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_KLULA1.209e-1630.39Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_HUMAN1.209e-1631.14Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_SOLTU1.579e-1632.52Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_RICPR2.062e-1628.83Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_PIG2.062e-1630.73Pyruvate dehydrogenase E1 component subunit alpha,... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186385 ID=CN186385; Name=CN186385; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTTTTTTTTTTGAACTATAATTACGTATAGATTGCTTTATTACT
ATCATAATGTACATGGCATGTAGAAACTTATTGACGCTACATTTTTCATT
TATATGGAGTTTTCAGGAGTTTTATTTTTTATCTTTCCGTTTCCCCCCTT
TATTCTACACATTTTATTGAAGTAGCCACGTGAAATCTATACAGGAACAT
CAGTGGGATAGTCTTGTGGATATTTTTGGATAATTTCTTTCAGCTGTTTC
TCTTGCTCAGCAAGGTTTGATGGGGGAACATCATATACATCGGAGAACAG
TTCTGTAATCGCCGGCTTTTCTGTTTTCTCTGCAACTTGAATTGCTTGCA
ACAACTGTTTCTTGATGCTACTTCGAAGCTCGGTTTCTTCTTGCTCACTC
CACCAGCCTTGCCTTTCCACCCAATTCCTAAATCTATTGACAGGACTTCG
TTCTGTTTTCCAGTACTCGATTTCATCAAGTGTTCGGTATTTGGTGGAAT
CATCCGAGGTTGAGTGATGTCCTACTCGATATGTAAGGGCCTCTACTAAC
ACAGGTCTCTTTTCACTGATAGCCATTTCACGAGCTGCCTGAACTGCGGT
ATAAACAGCAAGTGCATCATTTCCATCTACTCGTATGCTTCGGATACCAT
ATGCACGACCCTTAACAACAATACCATCGCTTCGAAATTGTTCTGATATA
TTGGTACTAATGGCCCAGCCATTGTTGCGACAGATGAAGACGACAGGGGC
TTCCATAACTGCTGCAAAGTT
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