CN186371 | Citrus Genome Database

Overview


Name	CN186371
Unique Name	CN186371
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	740

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4344	contig	Csv1_Contig4344:66..805.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DYN1_HUMAN (Dynamin-1 OS=Homo sapiens GN=DNM1 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.118e-48
Identity = 105/196 (53.57%), Postives = 132/196 (67.35%), Query Frame = 3

Query:  153 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            ME+LI LVN++Q A +A+G + +          LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL      + EYAEFLH   K+FTDF  VR EI+ ETDR TG  K IS VPI+L +YSP+V+NLTL+DLPG+TKV V  QP  I   I +M+  ++ K NC+ILA+SPAN DLA SDA+K++
Sbjct:    6 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190

[Close]

BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DYN1_BOVIN (Dynamin-1 OS=Bos taurus GN=DNM1 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.118e-48
Identity = 105/196 (53.57%), Postives = 132/196 (67.35%), Query Frame = 3

Query:  153 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            ME+LI LVN++Q A +A+G + +          LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL      + EYAEFLH   K+FTDF  VR EI+ ETDR TG  K IS VPI+L +YSP+V+NLTL+DLPG+TKV V  QP  I   I +M+  ++ K NC+ILA+SPAN DLA SDA+K++
Sbjct:    6 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190

[Close]

BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DYN3_RAT (Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 4.248e-48
Identity = 107/197 (54.31%), Postives = 131/197 (66.50%), Query Frame = 3

Query:  150 KMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +ME LI LVN++Q A +ALG         +    LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL        EYAEFLH   K+FTDF  VR EI+ ETDR TG  K ISSVPI+L +YSP+V+NLTLIDLPG+TKV V  QP  I   I +M+  +I + NC+ILA++PAN DLA SDA+K++
Sbjct:    5 EMEELIPLVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VTSKAEYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLA 190

[Close]

BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DYN3_MOUSE (Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.548e-48
Identity = 106/197 (53.81%), Postives = 131/197 (66.50%), Query Frame = 3

Query:  150 KMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +ME LI LVN++Q A +ALG         +    LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL        EYAEFLH   K+FTDF  VR EI+ ETDR TG  K ISS+PI+L +YSP+V+NLTLIDLPG+TKV V  QP  I   I +M+  +I + NC+ILA++PAN DLA SDA+K++
Sbjct:    5 EMEELIPLVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VTSKAEYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSIPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLA 190

[Close]

BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DYN1_CAEEL (Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 7.246e-48
Identity = 105/196 (53.57%), Postives = 133/196 (67.86%), Query Frame = 3

Query:  153 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            M+ LI ++N++Q A + LG         ++   LP IA            LE+ VGKDFLPRGSGIVTRRPL+LQL    +   EYAEFLH    RF DF AVRKEI+DETDR TG+ K IS  PI+L ++SPNV+NLTLIDLPGLTKV V  QP  I Q I +M+ ++I +  C+ILA++PAN DLATSDA+K++
Sbjct:    8 MQALIPVINRVQDAFSQLGT--------SVSFELPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLILQLI---QDRNEYAEFLHKKGHRFVDFDAVRKEIEDETDRVTGQNKGISPHPINLRVFSPNVLNLTLIDLPGLTKVPVGDQPADIEQQIRDMILTFINRETCLILAVTPANSDLATSDALKLA 192

[Close]

BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DYN3_HUMAN (Dynamin-3 OS=Homo sapiens GN=DNM3 PE=1 SV=4)

HSP 1 Score: 190.274 bits (482), Expect = 9.464e-48
Identity = 106/197 (53.81%), Postives = 130/197 (65.99%), Query Frame = 3

Query:  150 KMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +ME LI LVN++Q A +ALG         +    LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL        EYAEFLH   K+FTDF  VR EI+ ETDR TG  K ISS+PI+L +YSP+V+NLTLIDLPG+TKV V  QP  I   I  M+  +I + NC+ILA++PAN DLA SDA+K++
Sbjct:    5 EMEELIPLVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VTSKAEYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKGISSIPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPANTDLANSDALKLA 190

[Close]

BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DYN2_RAT (Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.157e-45
Identity = 102/196 (52.04%), Postives = 129/196 (65.82%), Query Frame = 3

Query:  153 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            ME LI LVNK+Q A +++G              LP IA            LE+ VG+DFLPRGSGIVTRRPL+LQL        EYAEFLH   K+FTDF  VR+EI+ ETDR TG  K IS VPI+L +YSP+V+NLTLIDLPG+TKV V  QP  I   I++M+  +I + + +ILA++PAN DLA SDA+K++
Sbjct:    6 MEELIPLVNKLQDAFSSIGQSCHLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLIF---SKTEYAEFLHCKSKKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLA 190

[Close]

BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DYN2_MOUSE (Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.157e-45
Identity = 102/196 (52.04%), Postives = 129/196 (65.82%), Query Frame = 3

Query:  153 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            ME LI LVNK+Q A +++G              LP IA            LE+ VG+DFLPRGSGIVTRRPL+LQL        EYAEFLH   K+FTDF  VR+EI+ ETDR TG  K IS VPI+L +YSP+V+NLTLIDLPG+TKV V  QP  I   I++M+  +I + + +ILA++PAN DLA SDA+K++
Sbjct:    6 MEELIPLVNKLQDAFSSIGQSCHLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLIF---SKTEYAEFLHCKSKKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLA 190

[Close]

BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DYN2_BOVIN (Dynamin-2 OS=Bos taurus GN=DNM2 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.157e-45
Identity = 102/196 (52.04%), Postives = 129/196 (65.82%), Query Frame = 3

Query:  153 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            ME LI LVNK+Q A +++G              LP IA            LE+ VG+DFLPRGSGIVTRRPL+LQL        EYAEFLH   ++FTDF  VR+EI+ ETDR TG  K IS VPI+L IYSP+V+NLTLIDLPG+TKV V  QP  I   I++M+  +I + + +ILA++PAN DLA SDA+K++
Sbjct:    6 MEELIPLVNKLQDAFSSIGQSCHLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLIF---SKTEYAEFLHCKSRKFTDFEEVRQEIEAETDRVTGTNKGISPVPINLRIYSPHVLNLTLIDLPGITKVPVGDQPQDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLA 190

[Close]

BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DYN2_HUMAN (Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.396e-45
Identity = 101/196 (51.53%), Postives = 129/196 (65.82%), Query Frame = 3

Query:  153 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            ME LI LVNK+Q A +++G              LP IA            LE+ VG+DFLPRGSGIVTRRPL+LQL        E+AEFLH   K+FTDF  VR+EI+ ETDR TG  K IS VPI+L +YSP+V+NLTLIDLPG+TKV V  QP  I   I++M+  +I + + +ILA++PAN DLA SDA+K++
Sbjct:    6 MEELIPLVNKLQDAFSSIGQSCHLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLIF---SKTEHAEFLHCKSKKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLA 190

The following BLAST results are available for this feature:

BLAST of CN186371 vs. ExPASy Swiss-Prot

BLAST of CN186371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74


Match Name	E-value	Identity	Description
DYN1_HUMAN	1.118e-48	53.57	Dynamin-1 OS=Homo sapiens GN=DNM1 PE=1 SV=2	[more]
DYN1_BOVIN	1.118e-48	53.57	Dynamin-1 OS=Bos taurus GN=DNM1 PE=2 SV=1	[more]
DYN3_RAT	4.248e-48	54.31	Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2	[more]
DYN3_MOUSE	5.548e-48	53.81	Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1	[more]
DYN1_CAEEL	7.246e-48	53.57	Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV...	[more]
DYN3_HUMAN	9.464e-48	53.81	Dynamin-3 OS=Homo sapiens GN=DNM3 PE=1 SV=4	[more]
DYN2_RAT	1.157e-45	52.04	Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1	[more]
DYN2_MOUSE	1.157e-45	52.04	Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2	[more]
DYN2_BOVIN	1.157e-45	52.04	Dynamin-2 OS=Bos taurus GN=DNM2 PE=2 SV=1	[more]
DYN2_HUMAN	4.396e-45	51.53	Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2	[more]

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Properties


Property Name	Value
Genbank description	UCRCS05_0002M17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M17, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN186371 ID=CN186371; Name=CN186371; organism=Citrus sinensis; type=EST; length=740bp
GCGGTCGAAGCAAAAACTAATCACACAGATCTCCTCTGAACCTCGCCGTT
TCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGATC
ATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTTCGAGAGA
AAATGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTACG
GCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACTC
TCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCAG
TGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTATC
GTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAAGGCAG
CAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAAAGATTTACCGATT
TTGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGATAGAGAGACTGGT
CGTACCAAACAAATCTCGAGTGTACCAATTCATCTCAGCATATATTCCCC
TAATGTTGTCAACTTAACGCTGATTGATCTTCCTGGGCTCACAAAAGTAG
CAGTTGAGGGTCAACCAGACAGTATTGTGCAAGATATTGAGAATATGGTT
CGCTCCTACATTGAGAAGCCCAACTGTATAATTCTTGCAATTTCACCTGC
AAATCAAGATCTTGCCACATCTGATGCAATCAAAATATCT