CN186371

Overview
NameCN186371
Unique NameCN186371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DYNA_DICDI (Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.279e-44
Identity = 101/201 (50.25%), Postives = 131/201 (65.17%), Query Frame = 3
Query:  153 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL---EEGSR--EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            M+ LI ++NK+Q     LG              LP I             LE+IVG+DFLPRGSGIVTRRPL+LQL  L   ++GS+  E+ EFLH P   F DF+ +R+EI  +TDR TG+ K IS+ PI+L IYSP+VVNLTL+DLPG+TKV V  QP  I Q I  MV +YI+K N II+A++PAN DLA SDA++++
Sbjct:    1 MDQLIPVINKLQDVFNTLGSDPL---------DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLA 192          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: VPS1_YEAST (Vacuolar protein sorting-associated protein 1 OS=Saccharomyces cerevisiae GN=VPS1 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.030e-41
Identity = 100/236 (42.37%), Postives = 130/236 (55.08%), Query Frame = 3
Query:  156 ENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL-----------------------------------------HKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            E+LIS +NK+Q A   LG   ++         LP I             LE+IVG+DFLPRG+GIVTRRPLVLQL                                          + E+   E+ EFLH+P K+F +F  +RKEI  ETD+ TG    ISSVPI+L IYSP+V+ LTL+DLPGLTKV V  QP  I + I++M+  YI KPN IIL+++ AN DLA SD +K++
Sbjct:    3 EHLISTINKLQDALAPLGGGSQSPI------DLPQITVVGSQSSGKSSVLENIVGRDFLPRGTGIVTRRPLVLQLINRRPKKSEHAKVNQTANELIDLNINDDDKKKDESGKHQNEGQSEDNKEEWGEFLHLPGKKFYNFDEIRKEIVKETDKVTGANSGISSVPINLRIYSPHVLTLTLVDLPGLTKVPVGDQPPDIERQIKDMLLKYISKPNAIILSVNAANTDLANSDGLKLA 232          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DNM1L_HUMAN (Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 6.569e-41
Identity = 96/209 (45.93%), Postives = 127/209 (60.77%), Query Frame = 3
Query:  153 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL-HKLEEGSR------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            ME LI ++NK+Q     +G    A  +      LP I             LES+VG+D LPRG+GIVTRRPL+LQL H  +E  R            E+ +FLH   K +TDF  +R+EI++ET+R +G  K +S  PIHL I+SPNVVNLTL+DLPG+TKV V  QP  I   I  ++  +I  PN IILA++ AN D+ATS+A+KIS
Sbjct:    1 MEALIPVINKLQDVFNTVG----ADII-----QLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVSQEDKRKTTGEENGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKIS 200          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DNM1L_DANRE (Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.569e-41
Identity = 94/208 (45.19%), Postives = 127/208 (61.06%), Query Frame = 3
Query:  153 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSR------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            ME LI ++NK+Q     +G    A  +      LP IA            LES+VG+D LPRG+GIVTRRPL+LQL  ++   R            E+ +FLH   K +TDF  +R+EI++ET+R +G  K IS  PIHL I+SP+VVNLTL+DLPG+TKV V  QP  I   I  ++  YI  PN IILA++ AN D+ATS+A+K++
Sbjct:    1 MEALIPVINKLQDVFNTVG----ADII-----QLPQIAVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVDPEDRRKTSEENGVDGEEWGKFLHTKNKIYTDFDEIRQEIENETERVSGNNKGISDEPIHLKIFSPHVVNLTLVDLPGITKVPVGDQPKDIELQIRELILKYISNPNSIILAVTAANTDMATSEALKVA 199          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DNM1_YEAST (Dynamin-related protein DNM1 OS=Saccharomyces cerevisiae GN=DNM1 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.121e-40
Identity = 97/235 (41.28%), Postives = 137/235 (58.30%), Query Frame = 3
Query:  153 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL--------------------------EEGSR-------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +E+LI  VNK+Q       D    S + TL   LP +A            LE++VG+DFLPRG+GIVTRRPLVLQL+ +                          E G++             E+ EFLHIP KRF DF  +++EI++ET R  G+ K IS +PI+L ++SP+V+NLTL+DLPG+TKV +  QP  I + I+N++  YI  PNC+ILA+SPAN DL  S+++K++
Sbjct:    4 LEDLIPTVNKLQ-------DVMYDSGIDTL--DLPILAVVGSQSSGKSSILETLVGRDFLPRGTGIVTRRPLVLQLNNISPNSPLIEEDDNSVNPHDEVTKISGFEAGTKPLEYRGKERNHADEWGEFLHIPGKRFYDFDDIKREIENETARIAGKDKGISKIPINLKVFSPHVLNLTLVDLPGITKVPIGEQPPDIEKQIKNLILDYIATPNCLILAVSPANVDLVNSESLKLA 229          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: VPS1_SCHPO (Vacuolar protein sorting-associated protein 1 OS=Schizosaccharomyces pombe GN=vps1 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.911e-40
Identity = 98/212 (46.23%), Postives = 129/212 (60.85%), Query Frame = 3
Query:  159 NLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL------------------HKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LI +VN++Q A + +G       +  L D LP I             LE+IVG+DFLPRG+GIVTRRPLVLQL                   K +  S E+ EFLH+P ++F +F  +R+EI  ET+ +TG+   ISSVPI+L IYSP+V+ LTL+DLPGLTKV V  QP  I + I  MV  YI K N IILA++ AN DLA SD +K++
Sbjct:    4 SLIKVVNQLQEAFSTVG-------VQNLID-LPQITVVRSQSSGKSSVLENIVGRDFLPRGTGIVTRRPLVLQLINRPSASGKNEETTTDSDGKDQNNSSEWGEFLHLPGQKFFEFEKIREEIVRETEEKTGKNVGISSVPIYLRIYSPHVLTLTLVDLPGLTKVPVGDQPRDIEKQIREMVLKYISKNNAIILAVNAANTDLANSDGLKLA 207          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DRP3B_ARATH (Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.239e-39
Identity = 94/217 (43.32%), Postives = 133/217 (61.29%), Query Frame = 3
Query:  108 LPPPSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGS-----REYAEFLHI-PRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            LPP S    T L     ++I +VNK+Q     LG     +        LP +A            LE++VG+DFLPRG+ I TRRPL LQL + +  S      E+ EFLH  P +R  DF+ +R+EI+ ET+R +G  K +S +PI L I+SPNV++++L+DLPG+TKV V  QP  I   I  M+ +YI++P+C+ILA+SPAN DLA SDA++I+
Sbjct:    6 LPPSSASAVTPLGS---SVIPIVNKLQDIFAQLGSQSTIA--------LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLRLQLVQTKPSSDGGSDEEWGEFLHHDPVRRIYDFSEIRREIEAETNRVSGENKGVSDIPIGLKIFSPNVLDISLVDLPGITKVPVGDQPSDIEARIRTMILTYIKEPSCLILAVSPANTDLANSDALQIA 211          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DNM1L_MOUSE (Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.239e-39
Identity = 94/215 (43.72%), Postives = 126/215 (58.60%), Query Frame = 3
Query:  153 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL-HKLEEGSR------------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            ME LI ++NK+Q     +G    A  +      LP I             LES+VG+D LPRG+G+VTRRPL+LQL H   E  R                  E+ +FLH   K +TDF  +R+EI++ET+R +G  K +S  PIHL ++SPNVVNLTL+DLPG+TKV V  QP  I   I  ++  +I  PN IILA++ AN D+ATS+A+KIS
Sbjct:    1 MEALIPVINKLQDVFNTVG----ADII-----QLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGVVTRRPLILQLVHVSPEDKRKTTGEENGKFQSWRVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKVFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKIS 206          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DRP3A_ARATH (Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.605e-39
Identity = 91/214 (42.52%), Postives = 127/214 (59.35%), Query Frame = 3
Query:  117 PSPEIST*LREKM-ENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSR-----EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            PSP  ST     +  ++I +VNK+Q     LG     +        LP +             LE++VG+DFLPRG+ I TRRPLVLQL + +  +      E+ EF H+P  RF DF+ +R+EI+ ET+R  G  K ++   I L I SPNV+N+TL+DLPG+TKV V  QP  I   I  M+ SYI++  C+ILA++PAN DLA SDA++I+
Sbjct:   21 PSPSSSTTNAAPLGSSVIPIVNKLQDIFAQLGSQSTIA--------LPQVVVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKSRANGGSDDEWGEFRHLPETRFYDFSEIRREIEAETNRLVGENKGVADTQIRLKISSPNVLNITLVDLPGITKVPVGDQPSDIEARIRTMILSYIKQDTCLILAVTPANTDLANSDALQIA 226          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DNM1L_BOVIN (Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.605e-39
Identity = 96/222 (43.24%), Postives = 126/222 (56.76%), Query Frame = 3
Query:  153 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL-HKLEEGSR-------------------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            ME LI ++NK+Q     +G    A  +      LP I             LES+VG+D LPRG+GIVTRRPL+LQL H   E  R                         E+ +FLH   K +TDF  +R+EI++ET+R +G  K +S  PIHL I+SPNVVNLTL+DLPG+TKV V  QP  I   I  ++  +I  PN IILA++ AN D+ATS+A+KIS
Sbjct:    1 MEALIPVINKLQDVFNTVG----ADII-----QLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVAPEDKRKTTGEENDPATWKNSRHLSKGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKIS 213          
The following BLAST results are available for this feature:
BLAST of CN186371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
DYNA_DICDI1.279e-4450.25Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1... [more]
VPS1_YEAST5.030e-4142.37Vacuolar protein sorting-associated protein 1 OS=S... [more]
DNM1L_HUMAN6.569e-4145.93Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE... [more]
DNM1L_DANRE6.569e-4145.19Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=... [more]
DNM1_YEAST1.121e-4041.28Dynamin-related protein DNM1 OS=Saccharomyces cere... [more]
VPS1_SCHPO1.911e-4046.23Vacuolar protein sorting-associated protein 1 OS=S... [more]
DRP3B_ARATH1.239e-3943.32Dynamin-related protein 3B OS=Arabidopsis thaliana... [more]
DNM1L_MOUSE1.239e-3943.72Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE... [more]
DRP3A_ARATH3.605e-3942.52Dynamin-related protein 3A OS=Arabidopsis thaliana... [more]
DNM1L_BOVIN3.605e-3943.24Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186371 ID=CN186371; Name=CN186371; organism=Citrus sinensis; type=EST; length=740bp
GCGGTCGAAGCAAAAACTAATCACACAGATCTCCTCTGAACCTCGCCGTT
TCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGATC
ATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTTCGAGAGA
AAATGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTACG
GCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACTC
TCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCAG
TGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTATC
GTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAAGGCAG
CAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAAAGATTTACCGATT
TTGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGATAGAGAGACTGGT
CGTACCAAACAAATCTCGAGTGTACCAATTCATCTCAGCATATATTCCCC
TAATGTTGTCAACTTAACGCTGATTGATCTTCCTGGGCTCACAAAAGTAG
CAGTTGAGGGTCAACCAGACAGTATTGTGCAAGATATTGAGAATATGGTT
CGCTCCTACATTGAGAAGCCCAACTGTATAATTCTTGCAATTTCACCTGC
AAATCAAGATCTTGCCACATCTGATGCAATCAAAATATCT
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