CN186371

Overview
NameCN186371
Unique NameCN186371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DNM1L_RAT (Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm1l PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.030e-39
Identity = 94/222 (42.34%), Postives = 126/222 (56.76%), Query Frame = 3
Query:  153 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL-HKLEEGSR-------------------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            ME LI ++NK+Q     +G    A  +      LP I             LES+VG+D LPRG+G+VTRRPL+LQL H   E  R                         E+ +FLH   K +TDF  +R+EI++ET+R +G  K +S  PIHL ++SPNVVNLTL+DLPG+TKV V  QP  I   I  ++  +I  PN IILA++ AN D+ATS+A+KIS
Sbjct:    1 MEALIPVINKLQDVFNTVG----ADII-----QLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGVVTRRPLILQLVHVSPEDKRKTTGEENDPATWKNSRHLSKGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKVFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKIS 213          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: DYNB_DICDI (Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.789e-38
Identity = 94/220 (42.73%), Postives = 126/220 (57.27%), Query Frame = 3
Query:  159 NLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSR--------------------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +L+ ++NK+Q     +G             +LP I             LE++VG+DFLPRGSG+VTRRPLVLQL++    SR                          E+ EF H    RF +F  +++EI+ ET+R  G  K ISS PI L IYSP VV LTL+DLPGLT+VA+E QP  I + I++M+  YI  PN IILAI+PANQD+ TSDA+K++
Sbjct:  136 SLLPIINKLQENAALIGSE----------ITLPQIIVVGSQSSGKSSVLENLVGRDFLPRGSGLVTRRPLVLQLYQTTTTSRNNVNENEDEDEDDNYYDNDNDDNSLEEWGEFGHTGTNRF-NFQEIKEEIERETERIAGPNKDISSEPIVLKIYSPKVVPLTLVDLPGLTRVAIEDQPPDIEEKIKSMIIDYISNPNSIILAITPANQDIVTSDALKLA 344          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: YB68_SCHPO (Dynamin-like protein C12C2.08 OS=Schizosaccharomyces pombe GN=SPBC12C2.08 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.514e-37
Identity = 98/232 (42.24%), Postives = 126/232 (54.31%), Query Frame = 3
Query:  153 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL-------------------------EEGSRE-----------YAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            ME LI LVN++Q            + + + +  LP+I             LE+IVGKDFLPRG+GIVTRRPL+LQL  L                         E GS E           YAEFLHIP  +FTD   VR EI++ET R  G  K I+ +PI+L IYS  V+NLTLIDLPGLTK+ V  QP  I     +++  YI +PN IILA+SPAN D+  S+ +K++
Sbjct:    1 MEQLIPLVNQLQDLVY--------NTIGSDFLDLPSIVVVGSQSCGKSSVLENIVGKDFLPRGTGIVTRRPLILQLINLKRKTKNNHDEESTSDNNSEETSAAGETGSLEGIEEDSDEIEDYAEFLHIPDTKFTDMNKVRAEIENETLRVAGANKGINKLPINLKIYSTRVLNLTLIDLPGLTKIPVGDQPTDIEAQTRSLIMEYISRPNSIILAVSPANFDIVNSEGLKLA 224          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX_PERFL (Interferon-induced GTP-binding protein Mx (Fragment) OS=Perca fluviatilis GN=mx PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.275e-24
Identity = 67/165 (40.61%), Postives = 99/165 (60.00%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   Y +  +    K   D A V K+I+D  D   G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP++I   I+ +++ +I++   I L + P N D+AT++A+K++
Sbjct:   34 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRRQEGEEWYGKISYQDCEKEIEDPADVEKKIRDAQDEMAGVGVGISDDLISLEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQKFIKRQETISLVVVPCNVDIATTEALKMA 197          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX1_SHEEP (Interferon-induced GTP-binding protein Mx1 OS=Ovis aries GN=MX1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.245e-23
Identity = 79/200 (39.50%), Postives = 109/200 (54.50%), Query Frame = 3
Query:  147 EKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            E   NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KLE+      +   + R+   +D + V KEI +      G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I   I++++R YI +   I L + PAN D+AT++A++++
Sbjct:   31 ESKGNLYSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLRLKKLEKEGEWKGKVSFLDREIEISDASQVEKEISEAQIAIAGEGMGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPHDIEYQIKSLIRKYILRQETINLVVVPANVDIATTEALRMA 227          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX1_RAT (Interferon-induced GTP-binding protein Mx1 OS=Rattus norvegicus GN=Mx1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.123e-23
Identity = 76/200 (38.00%), Postives = 113/200 (56.50%), Query Frame = 3
Query:  147 EKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            E ++NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L +L++G +   + ++   +   +  + V +EI    +   G   +ISS  I L + SP+V +LTLIDLPG+T+VAV  QP  I   I+ ++  YI+K   I L + P+N D+AT++A+K++
Sbjct:   27 ESVDNLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKQLKQGEKWSGKVIYKDTEIEISHPSLVEREINKAQNLIAGEGLKISSDLISLEVSSPHVPDLTLIDLPGITRVAVGDQPADIEHKIKRLITEYIQKQETINLVVVPSNVDIATTEALKMA 223          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX_DICLA (Interferon-induced GTP-binding protein Mx OS=Dicentrarchus labrax GN=mx PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.773e-23
Identity = 65/165 (39.39%), Postives = 98/165 (59.39%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ +  EG   Y +  +I   +   D A V K+I++  ++  G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP++I   I+ +++ +I K   I L + P N D+AT++A+ ++
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKNEGEEWYGKITYIGFEENIKDPADVEKKIREAQNKIAGPGSGISEDLISLEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQKFITKQETISLVVVPCNVDIATTEALNMA 195          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX_ONCMY (Interferon-induced GTP-binding protein Mx OS=Oncorhynchus mykiss GN=mx PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.068e-23
Identity = 65/165 (39.39%), Postives = 99/165 (60.00%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   + +  +   +    D + V K+I++  D   G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP++I + I+ ++R +I K   I L + P N D+AT++A+K++
Sbjct:   33 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWHGKISYQDHEEEIEDPSDVEKKIREAQDEMAGVGVGISDDLISLEIGSPDVPDLTLIDLPGIARVAVKGQPENIGEQIKRLIRKFIMKQETISLVVVPCNVDIATTEALKMA 196          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX2_MOUSE (Interferon-induced GTP-binding protein Mx2 OS=Mus musculus GN=Mx2 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.376e-22
Identity = 77/201 (38.31%), Postives = 110/201 (54.73%), Query Frame = 3
Query:  144 REKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +E + NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL EG     +  +   +   +D + V + I    +   G    IS   I L + SPNV +LTLIDLPG+T+VAV  QP  I + I+ ++++YI+K   I L + P+N D+AT++A+ ++
Sbjct:   28 QESVNNLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLRKLNEGEEWRGKVSYDDIEVELSDPSEVEEAINKGQNFIAGVGLGISDKLISLDVSSPNVPDLTLIDLPGITRVAVGNQPADIGRQIKRLIKTYIQKQETINLVVVPSNVDIATTEALSMA 225          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX_SINCH (Interferon-induced GTP-binding protein Mx OS=Siniperca chuatsi GN=mx PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.797e-22
Identity = 65/165 (39.39%), Postives = 97/165 (58.79%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   Y +  +   +    D A V K+I++  D   G    IS   I L I SP V +LTLIDLPG+ +VAV+GQP++I   I+ +++++I K   I L + P N D+AT++A+ ++
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWYGKISYQNHEEEIEDPADVEKKIREAQDEMAGVGVGISDDLISLEIGSPGVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQTFITKQETISLVVVPCNVDIATTEALNMA 195          
The following BLAST results are available for this feature:
BLAST of CN186371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
DNM1L_RAT8.030e-3942.34Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm... [more]
DYNB_DICDI1.789e-3842.73Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3... [more]
YB68_SCHPO1.514e-3742.24Dynamin-like protein C12C2.08 OS=Schizosaccharomyc... [more]
MX_PERFL3.275e-2440.61Interferon-induced GTP-binding protein Mx (Fragmen... [more]
MX1_SHEEP1.245e-2339.50Interferon-induced GTP-binding protein Mx1 OS=Ovis... [more]
MX1_RAT2.123e-2338.00Interferon-induced GTP-binding protein Mx1 OS=Ratt... [more]
MX_DICLA2.773e-2339.39Interferon-induced GTP-binding protein Mx OS=Dicen... [more]
MX_ONCMY8.068e-2339.39Interferon-induced GTP-binding protein Mx OS=Oncor... [more]
MX2_MOUSE1.376e-2238.31Interferon-induced GTP-binding protein Mx2 OS=Mus ... [more]
MX_SINCH1.797e-2239.39Interferon-induced GTP-binding protein Mx OS=Sinip... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002M17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186371 ID=CN186371; Name=CN186371; organism=Citrus sinensis; type=EST; length=740bp
GCGGTCGAAGCAAAAACTAATCACACAGATCTCCTCTGAACCTCGCCGTT
TCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGATC
ATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTTCGAGAGA
AAATGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTACG
GCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACTC
TCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCAG
TGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTATC
GTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAAGGCAG
CAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAAAGATTTACCGATT
TTGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGATAGAGAGACTGGT
CGTACCAAACAAATCTCGAGTGTACCAATTCATCTCAGCATATATTCCCC
TAATGTTGTCAACTTAACGCTGATTGATCTTCCTGGGCTCACAAAAGTAG
CAGTTGAGGGTCAACCAGACAGTATTGTGCAAGATATTGAGAATATGGTT
CGCTCCTACATTGAGAAGCCCAACTGTATAATTCTTGCAATTTCACCTGC
AAATCAAGATCTTGCCACATCTGATGCAATCAAAATATCT
back to top