CN186371

Overview
NameCN186371
Unique NameCN186371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4344 contig Csv1_Contig4344:66..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX1_BOVIN (Interferon-induced GTP-binding protein Mx1 OS=Bos taurus GN=MX1 PE=2 SV=4)

HSP 1 Score: 106.301 bits (264), Expect = 1.797e-22
Identity = 82/212 (38.68%), Postives = 112/212 (52.83%), Query Frame = 3
Query:  120 SPEIST*LREKME---NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            SPE S    E ME   NL S   +  R C  L D     +L    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL        +   + ++    D + V KEI +      G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I   I++++R YI +   I L + PAN D+AT++A++++
Sbjct:   13 SPESSLNGSEDMESKSNLYSQYEEKVRPCIDLID--SLRSLGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLRLKKLGNEDEWKGKVSFLDKEIEIPDASQVEKEISEAQIAIAGEGTGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPPDIEYQIKSLIRKYILRQETINLVVVPANVDIATTEALRMA 221          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MXB_DANRE (Interferon-induced GTP-binding protein MxB OS=Danio rerio GN=mxb PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 65/165 (39.39%), Postives = 97/165 (58.79%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +E  + +    +   +  F D A V K+I++  D   G    IS   I L I S NV +LTLIDLPG+ +VAV+GQP++I   I+ ++R +I K   I L + P N D+AT++A++++
Sbjct:   36 ALPAIAVIGDQSSGKSSVLEALSGVP-LPRGSGIVTRCPLELKMIRSKEDEKWHGRISYQNHEEDFDDPAEVEKKIREAQDEMAGAGVGISEELISLQITSANVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIRMFITKQETINLVVVPCNVDIATTEALQMA 199          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX_EPICO (Interferon-induced GTP-binding protein Mx OS=Epinephelus coioides GN=mx PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 64/165 (38.79%), Postives = 97/165 (58.79%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   Y +  +    K   D + V  +I++  D   G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP+ I + I+ +++ +I +   I L + P N D+AT++A+K++
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWYGKISYRGCEKELEDPSDVENKIREAQDEMAGVGVGISDDLISLEIASPDVPDLTLIDLPGIARVAVKGQPEDIGKQIKGLIQRFITRQETISLVVVPCNVDIATTEALKMA 195          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX_LARCR (Interferon-induced GTP-binding protein Mx OS=Larimichthys crocea GN=mx PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.830e-22
Identity = 62/165 (37.58%), Postives = 99/165 (60.00%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAA-VRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   Y +  +   +   +  A V K+I++  D+  G   +I+   I L I SP+V +LTLI LPG+ +VAV+ QP++I   I+ +++ +I+K   I L + P N D+AT++A+K++
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWYGKISYQDYEEEIEVPADVEKKIREAQDKMAGNGVEIADDLISLEIASPDVPDLTLIALPGIARVAVKKQPENIGDQIKRLIQKFIKKQETINLVVVPCNMDIATTEALKMA 195          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX3_RAT (Interferon-induced GTP-binding protein Mx3 OS=Rattus norvegicus GN=Mx3 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 74/201 (36.82%), Postives = 109/201 (54.23%), Query Frame = 3
Query:  144 REKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            ++ + NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL +G     +  +   +   +D + V + I    +   G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I + I+ ++ +YI+K   I L + P+N D+AT++A+ ++
Sbjct:   33 KDSVNNLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLNQGEEWKGKVTYDDIEVELSDPSEVEEAINTGQNHIAGVGLGISDKLISLDVSSPHVPDLTLIDLPGITRVAVGNQPSDIGRQIKRLITNYIQKQETINLVVVPSNVDIATTEALSMA 230          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX1_MOUSE (Interferon-induced GTP-binding protein Mx1 OS=Mus musculus GN=Mx1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 66/165 (40.00%), Postives = 97/165 (58.79%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL+EG     +  +   +   +D + V + I    +   G    IS   I L + SPNV +LTLIDLPG+T+VAV  QP  I + I+ ++++YI+K   I L + P+N D+AT++A+ ++
Sbjct:   35 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLRKLKEGEEWRGKVSYDDIEVELSDPSEVEEAINKGQNFIAGVGLGISDKLISLDVSSPNVPDLTLIDLPGITRVAVGNQPADIGRQIKRLIKTYIQKQETINLVVVPSNVDIATTEALSMA 198          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX2_RAT (Interferon-induced GTP-binding protein Mx2 OS=Rattus norvegicus GN=Mx2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.522e-21
Identity = 74/201 (36.82%), Postives = 109/201 (54.23%), Query Frame = 3
Query:  144 REKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            ++ + NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL +G     +  +   +   +D + V + I    +   G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I + I+ ++ +YI+K   I L + P+N D+AT++A+ ++
Sbjct:   33 KDSLNNLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLNQGEEWKGKVTYDDIEVELSDPSEVEEAINTGQNHIAGVGLGISDKLISLDVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQIKRLITNYIQKQETINLVVVPSNVDIATTEALSMA 230          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX2_CANFA (Interferon-induced GTP-binding protein Mx2 OS=Canis familiaris GN=MX2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.522e-21
Identity = 69/168 (41.07%), Postives = 95/168 (56.55%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL----HKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGIVTR PLVL+L    HK   G   Y +       +F D + V KEI+   +   G+   IS   I L I SP V +LTLIDLPG+T+VAV  QP  I   I+ ++++YI+K   I L + P N D+AT++A+ ++
Sbjct:  117 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKRDPHKAWRGRISYRK----TELQFQDPSQVEKEIRQAQNIIAGQGLGISHELISLEITSPEVPDLTLIDLPGITRVAVGNQPQDIGVQIKALIKNYIQKQETINLVVVPCNVDIATTEALSMA 279          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MXA_DANRE (Interferon-induced GTP-binding protein MxA OS=Danio rerio GN=mxa PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 62/165 (37.58%), Postives = 96/165 (58.18%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + ++  R +    +    + F D A V K+I+   D   G    IS   I L I S +V +LTLIDLPG+ +VAV+GQP++I   I+ ++R ++ +   I L + P N D+AT++A++++
Sbjct:   36 ALPAIAVIGDQSSGKSSVLEALSGVP-LPRGSGIVTRCPLELKMIRTKDQDRWHGRISYKTCEEDFDDPAEVEKKIRQAQDEMAGAGVGISEELISLQITSADVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIRKFVTRQETINLVVVPCNVDIATTEALQMA 199          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MSP1_SCHPO (Protein msp1, mitochondrial OS=Schizosaccharomyces pombe GN=msp1 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.551e-21
Identity = 59/164 (35.98%), Postives = 92/164 (56.10%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LP+I             LE+IVG +FLP+GS +VTRRP+ L L    + +  Y EF  +   + TDF+ + + I  + +     ++ +   PI L+IY+ ++ NL+LIDLPG  ++  E QP  +   I  +   YI +PN IILA+  A+ DLA S A++ S
Sbjct:  262 TLPSIVVIGSQSSGKSSVLEAIVGHEFLPKGSNMVTRRPIELTLVHSADTAIPYGEFSGVQLGKITDFSKI-QHILTDLNMAVPSSQGVDDNPIRLTIYASHIPNLSLIDLPGYIQIHSEDQPADLDMKISKLCEKYIREPN-IILAVCAADVDLANSAALRAS 423          
The following BLAST results are available for this feature:
BLAST of CN186371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
MX1_BOVIN1.797e-2238.68Interferon-induced GTP-binding protein Mx1 OS=Bos ... [more]
MXB_DANRE2.347e-2239.39Interferon-induced GTP-binding protein MxB OS=Dani... [more]
MX_EPICO3.066e-2238.79Interferon-induced GTP-binding protein Mx OS=Epine... [more]
MX_LARCR6.830e-2237.58Interferon-induced GTP-binding protein Mx OS=Larim... [more]
MX3_RAT1.165e-2136.82Interferon-induced GTP-binding protein Mx3 OS=Ratt... [more]
MX1_MOUSE1.165e-2140.00Interferon-induced GTP-binding protein Mx1 OS=Mus ... [more]
MX2_RAT1.522e-2136.82Interferon-induced GTP-binding protein Mx2 OS=Ratt... [more]
MX2_CANFA1.522e-2141.07Interferon-induced GTP-binding protein Mx2 OS=Cani... [more]
MXA_DANRE4.427e-2137.58Interferon-induced GTP-binding protein MxA OS=Dani... [more]
MSP1_SCHPO7.551e-2135.98Protein msp1, mitochondrial OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186371 ID=CN186371; Name=CN186371; organism=Citrus sinensis; type=EST; length=740bp
GCGGTCGAAGCAAAAACTAATCACACAGATCTCCTCTGAACCTCGCCGTT
TCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGATC
ATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTTCGAGAGA
AAATGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTACG
GCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACTC
TCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCAG
TGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTATC
GTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAAGGCAG
CAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAAAGATTTACCGATT
TTGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGATAGAGAGACTGGT
CGTACCAAACAAATCTCGAGTGTACCAATTCATCTCAGCATATATTCCCC
TAATGTTGTCAACTTAACGCTGATTGATCTTCCTGGGCTCACAAAAGTAG
CAGTTGAGGGTCAACCAGACAGTATTGTGCAAGATATTGAGAATATGGTT
CGCTCCTACATTGAGAAGCCCAACTGTATAATTCTTGCAATTTCACCTGC
AAATCAAGATCTTGCCACATCTGATGCAATCAAAATATCT
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