CN186371

Overview
NameCN186371
Unique NameCN186371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX1_PIG (Interferon-induced GTP-binding protein Mx1 OS=Sus scrofa GN=MX1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 76/197 (38.58%), Postives = 103/197 (52.28%), Query Frame = 3
Query:  159 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL--EEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL  EE   +            +D + V KE+        G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I   I+++++ YI K   I L + P N D+AT++A++++
Sbjct:   40 NLYSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMA 233          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX1_MACMU (Interferon-induced GTP-binding protein Mx1 OS=Macaca mulatta GN=MX1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 77/200 (38.50%), Postives = 103/200 (51.50%), Query Frame = 3
Query:  159 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y ++         D + V KEI    +   G    IS   I L I S +V +LTLIDLPG+T+VAV  QP  I   I+ ++R YI++   I L + P+N D+AT++A+ ++
Sbjct:   40 NLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDEWRGKVSYQDY----EIEILDASEVEKEINKAQNTIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPPDIGYKIKTLIRKYIQRQETINLVVVPSNVDIATTEALSMA 232          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX2_SHEEP (Interferon-induced GTP-binding protein Mx2 OS=Ovis aries GN=MX2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 67/170 (39.41%), Postives = 96/170 (56.47%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLE---EGS---REYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGI+TR PLVL+L K E    G    R   + LH P +       V +EI+   +   G    IS   I+L + SP V +LTLIDLPG+T+VAVE QP  I   I+ ++++YI++   I L + P N D+AT++A+ ++
Sbjct:  117 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIITRCPLVLKLTKRECEWTGKITYRNVTQQLHNPSE-------VEREIRRAQNIIAGNGVGISHELINLEVTSPEVPDLTLIDLPGITRVAVENQPQDIGLQIKALIKTYIQRQETINLVVVPCNVDIATTEALSMA 278          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX1_PONAB (Interferon-induced GTP-binding protein Mx1 OS=Pongo abelii GN=MX1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 76/200 (38.00%), Postives = 104/200 (52.00%), Query Frame = 3
Query:  159 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y ++        +D + V KEI    +   G    IS   I L I S +V +LTLIDLPG+T+VAV  QP  I   I+ +++ YI++   I L + P+N D+AT++A+ ++
Sbjct:   40 NLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDY----EIEISDASEVEKEINKAQNTIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMA 232          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX1_PHOVI (Interferon-induced GTP-binding protein Mx1 OS=Phoca vitulina GN=MX1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 75/213 (35.21%), Postives = 108/213 (50.70%), Query Frame = 3
Query:  117 PSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            P   + +   EK+   I L++ ++    ALG   + +        LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y +F        +D + V  EI    +   G  + IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I +  + ++R YI K   I L + P N D+AT++A+ ++
Sbjct:   35 PENSLCSQYEEKVRPCIDLIDSLR----ALGVEQDLA--------LPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLLNEDEWRGKVSYQDF----EMEISDPSEVEVEISKAQNVIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQTKQLIRKYILKQETINLVVVPCNVDIATTEALSMA 230          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX1_HUMAN (Interferon-induced GTP-binding protein Mx1 OS=Homo sapiens GN=MX1 PE=1 SV=4)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 76/200 (38.00%), Postives = 104/200 (52.00%), Query Frame = 3
Query:  159 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y ++        +D + V KEI    +   G    IS   I L I S +V +LTLIDLPG+T+VAV  QP  I   I+ +++ YI++   I L + P+N D+AT++A+ ++
Sbjct:   40 NLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDY----EIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMA 232          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX1_CANFA (Interferon-induced GTP-binding protein Mx1 OS=Canis familiaris GN=MX1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 67/166 (40.36%), Postives = 93/166 (56.02%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL--EEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL  E+  R    +     +  +D + V  EI    D   G  + IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I +  + ++R YI K   I L + P N D+AT++A+ ++
Sbjct:   65 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLINEDEWRGKVSYQDTEME-ISDPSEVEVEINKAQDAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQTKQLIRKYILKQETINLVVVPCNVDIATTEALSMA 228          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX2_PIG (Interferon-induced GTP-binding protein Mx2 OS=Sus scrofa GN=MX2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 74/198 (37.37%), Postives = 103/198 (52.02%), Query Frame = 3
Query:  159 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLE---EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            NL S   +  R C  L D     AL    D +LP IA            LE++ G   LPRGSGI+TR PL L+L K E   +G   Y +       +  D + V +EI+   D   G    IS   I L + SP V +LTLIDLPG+T+VAV  QP  I   I+ ++R YI++   I L + P N D+AT++A++++
Sbjct:   85 NLYSPFEEKVRPCIDLID--SLRALGVEQDLALPTIAVIGDQSSGKSSVLEALSGVP-LPRGSGIITRCPLALRLKKKECPWQGRISYRKV----ELQLQDPSQVEREIRKAQDAIAGSGVGISHELISLEVTSPEVPDLTLIDLPGITRVAVGNQPQDIGLQIKALIRKYIQEQQTINLVVVPCNVDIATTEALRMA 275          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX2_HUMAN (Interferon-induced GTP-binding protein Mx2 OS=Homo sapiens GN=MX2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 76/211 (36.02%), Postives = 102/211 (48.34%), Query Frame = 3
Query:  111 PPPSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            PPP             NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L K    +               D   V KEI    +   G  + IS   I L I SP V +LT+IDLPG+T+VAV+ QP  I   I+ +++ YI++   I L + P N D+AT++A+ ++
Sbjct:   72 PPPGNRSQPRAMGPENNLYSQYEQKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKQPCEAWAGRISYRNTELELQDPGQVEKEIHKAQNVMAGNGRGISHELISLEITSPEVPDLTIIDLPGITRVAVDNQPRDIGLQIKALIKKYIQRQQTINLVVVPCNVDIATTEALSMA 279          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MGM1_YEAST (Dynamin-like GTPase MGM1, mitochondrial OS=Saccharomyces cerevisiae GN=MGM1 PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 67/195 (34.36%), Postives = 101/195 (51.79%), Query Frame = 3
Query:  156 ENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            + +++L  ++    T L     +SA  TL    P+I             LESIVG++FLP+GS +VTRRP+ L L      +   A+F  +      DF  V++ +  E +     ++ +S  PI L+I S  V +L+L+DLPG  +V    QP  +   I ++   Y+  PN IILAIS A+ DLA S A+K S
Sbjct:  182 DEMLNLTKQMIEIRTILNKVDSSSAHLTL----PSIVVIGSQSSGKSSVLESIVGREFLPKGSNMVTRRPIELTLVNTPNSNNVTADFPSMRLYNIKDFKEVKRMLM-ELNMAVPTSEAVSEEPIQLTIKSSRVPDLSLVDLPGYIQVEAADQPIELKTKIRDLCEKYLTAPN-IILAISAADVDLANSSALKAS 370          
The following BLAST results are available for this feature:
BLAST of CN186371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
MX1_PIG2.197e-2038.58Interferon-induced GTP-binding protein Mx1 OS=Sus ... [more]
MX1_MACMU2.197e-2038.50Interferon-induced GTP-binding protein Mx1 OS=Maca... [more]
MX2_SHEEP2.869e-2039.41Interferon-induced GTP-binding protein Mx2 OS=Ovis... [more]
MX1_PONAB2.869e-2038.00Interferon-induced GTP-binding protein Mx1 OS=Pong... [more]
MX1_PHOVI2.869e-2035.21Interferon-induced GTP-binding protein Mx1 OS=Phoc... [more]
MX1_HUMAN2.869e-2038.00Interferon-induced GTP-binding protein Mx1 OS=Homo... [more]
MX1_CANFA2.869e-2040.36Interferon-induced GTP-binding protein Mx1 OS=Cani... [more]
MX2_PIG3.748e-2037.37Interferon-induced GTP-binding protein Mx2 OS=Sus ... [more]
MX2_HUMAN3.748e-2036.02Interferon-induced GTP-binding protein Mx2 OS=Homo... [more]
MGM1_YEAST3.748e-2034.36Dynamin-like GTPase MGM1, mitochondrial OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186371 ID=CN186371; Name=CN186371; organism=Citrus sinensis; type=EST; length=740bp
GCGGTCGAAGCAAAAACTAATCACACAGATCTCCTCTGAACCTCGCCGTT
TCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGATC
ATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTTCGAGAGA
AAATGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTACG
GCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACTC
TCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCAG
TGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTATC
GTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAAGGCAG
CAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAAAGATTTACCGATT
TTGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGATAGAGAGACTGGT
CGTACCAAACAAATCTCGAGTGTACCAATTCATCTCAGCATATATTCCCC
TAATGTTGTCAACTTAACGCTGATTGATCTTCCTGGGCTCACAAAAGTAG
CAGTTGAGGGTCAACCAGACAGTATTGTGCAAGATATTGAGAATATGGTT
CGCTCCTACATTGAGAAGCCCAACTGTATAATTCTTGCAATTTCACCTGC
AAATCAAGATCTTGCCACATCTGATGCAATCAAAATATCT
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