CN186371

Overview
NameCN186371
Unique NameCN186371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX1_OTABY (Interferon-induced GTP-binding protein Mx1 OS=Otaria byronia GN=MX1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20
Identity = 74/213 (34.74%), Postives = 107/213 (50.23%), Query Frame = 3
Query:  117 PSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            P   + +   EK+   I L++ ++    ALG   + +        LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y +F        +D + V  EI    +   G  + IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I    + +++ YI K   I L + P N D+AT++A+ ++
Sbjct:   35 PENSLCSQYEEKVRPCIDLIDSLR----ALGVEQDLA--------LPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLLNKDEWRGKVSYQDF----EMEISDPSEVEVEINKAQNAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGHQTKKLIKKYILKQETINLVVVPCNVDIATTEALSMA 230          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX1_EUMJU (Interferon-induced GTP-binding protein Mx1 OS=Eumetopias jubatus GN=MX1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20
Identity = 74/213 (34.74%), Postives = 107/213 (50.23%), Query Frame = 3
Query:  117 PSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            P   + +   EK+   I L++ ++    ALG   + +        LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y +F        +D + V  EI    +   G  + IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I    + +++ YI K   I L + P N D+AT++A+ ++
Sbjct:   35 PENSLCSQYEEKVRPCIDLIDSLR----ALGVEQDLA--------LPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLLNKDEWRGKVSYQDF----EMEISDPSEVEVEINKAQNAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGHQTKKLIKKYILKQETINLVVVPCNVDIATTEALSMA 230          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX_SOLSE (Interferon-induced GTP-binding protein Mx OS=Solea senegalensis GN=mx PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 63/165 (38.18%), Postives = 94/165 (56.97%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ +  +G     +  +   +    D A V K+I++   +  G    IS   I L I SP+V +LTLIDLPG+T+VAV GQP +I + I+ ++  +I K   I L +   N DLAT++A++++
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKNDGEGWQGKISYQDHEEEIQDPADVEKKIEEAQIQIAGVGVGISENMISLEIASPDVPDLTLIDLPGITRVAVHGQPVNIGEQIKKLIHKFITKQETICLVVHACNVDLATTEALQMA 195          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX1_ICTPU (Interferon-induced GTP-binding protein Mx1 OS=Ictalurus punctatus GN=mx1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 73/220 (33.18%), Postives = 113/220 (51.36%), Query Frame = 3
Query:  120 SPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGS-------------REYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            S  +S    EK+   I L++ ++    ALG   + +        LPAIA            LE++ G   LPRGSGIVTR PL L++ +  E                +Y E +  P       A V K+I++  D   G    IS   I L + S +V +LTLIDLPG+ +VAV+GQP++I + I+ +++ +I K   I L + P+N D+AT++A+K++
Sbjct:    2 SASLSEQYEEKVRPCIDLIDSLR----ALGVEKDLA--------LPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRSREEDFWHGKIKYKKDHDEDYEEEIQNP-------ADVEKKIREAQDHMAGVGVGISDELISLEVTSADVPDLTLIDLPGIARVAVKGQPENIGEQIKRLIKKFITKQETINLVVVPSNVDIATTEALKMA 201          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX2_BOVIN (Interferon-induced GTP-binding protein Mx2 OS=Bos taurus GN=MX2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 64/164 (39.02%), Postives = 94/164 (57.32%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGI+TR PLVL+L K E        + +I ++   + + V  EI+   +   G    IS   I+L I SP V +LTLIDLPG+T+VAVE QP  I   I+ +++ YI++   I L + P N D+AT++A+ ++
Sbjct:  114 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIITRCPLVLKLTKRECEWTGKITYRNITQQ-LQNPSEVEWEIRRAQNIIAGNGLGISHELINLEITSPEVPDLTLIDLPGITRVAVENQPQDIGLQIKALIKKYIQRQETINLVVVPCNVDIATTEALSMA 275          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX1_HORSE (Interferon-induced GTP-binding protein Mx1 OS=Equus caballus GN=MX1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 71/201 (35.32%), Postives = 107/201 (53.23%), Query Frame = 3
Query:  156 ENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L +L +     G   Y +         ++   V ++++   +   G    IS   + L + SP+V +LTLIDLPG+T+VAV  QP  I + I+ ++R YI++   I L + P+N D+AT++A+ ++
Sbjct:   39 KNLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKRLVKEDEWKGKVSYRDI----EVEISNALDVEEQVRKAQNVLAGEGVGISQELVTLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQIKTLIRKYIQRQETINLVVVPSNVDIATTEALSMA 232          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MXE_DANRE (Interferon-induced GTP-binding protein MxE OS=Danio rerio GN=mxe PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 60/165 (36.36%), Postives = 94/165 (56.97%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRG+GIVTR PLVL+L K+ +    +    +  + R   D A + K + +      G  + IS   I L I S +V +LTLIDLPG+ +VA   QP+ I + I++++  +I++   I L + PAN D+AT++A+K++
Sbjct:   42 NLPAIAVIGDQSSGKSSVLEALSGVA-LPRGTGIVTRCPLVLKLKKITKDKSWHGLLTYNDKIRELKDPAKIEKAVLNAQTALAGIGEGISHEMITLEIQSCDVPDLTLIDLPGIARVATGNQPEDIEKQIKSLIEKFIKRQETISLVVVPANIDIATTEALKMA 205          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX2_ICTPU (Interferon-induced GTP-binding protein Mx2 OS=Ictalurus punctatus GN=mx2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 61/169 (36.09%), Postives = 94/169 (55.62%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ K  +     G  +Y ++     +   D A V + I+   +   G    IS   I L + S NV +LT+IDLPG+T+VAV+ QP++I    + +++ +I K   I L + P N D+AT++A+K++
Sbjct:   31 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKKSRKADFWHGKIKYEDY----EEEIEDPADVEQMIRKAQNEIAGTGMGISDKLISLEVTSSNVPDLTVIDLPGITRVAVKDQPENIGDQSKRLIKKFITKQETINLVVVPCNVDIATTEALKMA 194          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX_ANAPL (Interferon-induced GTP-binding protein Mx OS=Anas platyrhynchos GN=MX PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.686e-18
Identity = 62/167 (37.13%), Postives = 88/167 (52.69%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDF---AAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            SLPAIA            LE++ G   LPRG+GIVTR PL L+L K+        +  +  R   TD    + V   I++  D   G    IS   I L I SP V +LTLIDLPG+ +VA+  QP  I + I+ +++  I     I L + P N D+AT++A+K++
Sbjct:  130 SLPAIAVIGDQSSGKSSILEALSGVS-LPRGNGIVTRCPLELKLKKIPTSQEWKGKISY--RNISTDLQHASEVENAIRNAQDVVAGTKGNISGELISLEICSPYVPDLTLIDLPGIARVAMRNQPQDIGEQIKKLIKKIISSKETINLVVVPCNVDIATTEALKMA 293          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX_CTEID (Interferon-induced GTP-binding protein Mx OS=Ctenopharyngodon idella GN=mx PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.814e-18
Identity = 61/172 (35.47%), Postives = 92/172 (53.49%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE--------GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRG+GIVTR PLVL+L K+ +        G   Y +      K+  D A +   +        G  + IS   I L I S +V +LTLIDLPG+ +VA   QP  I + I++++  YI++   I L + PAN D+AT++A++++
Sbjct:   42 NLPAIAVIGDQSSGKSSVLEALSGVA-LPRGTGIVTRCPLVLKLKKISKDNNWHQWHGLMSYRD----QTKKLKDPAEIENAVLKAQTVLAGTGEGISHEMITLEIQSSDVPDLTLIDLPGIARVATGNQPKDIEKQIKDLIEKYIKRQETISLVVVPANIDIATTEALQMA 208          
The following BLAST results are available for this feature:
BLAST of CN186371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
MX1_OTABY4.895e-2034.74Interferon-induced GTP-binding protein Mx1 OS=Otar... [more]
MX1_EUMJU4.895e-2034.74Interferon-induced GTP-binding protein Mx1 OS=Eume... [more]
MX_SOLSE6.392e-2038.18Interferon-induced GTP-binding protein Mx OS=Solea... [more]
MX1_ICTPU6.392e-2033.18Interferon-induced GTP-binding protein Mx1 OS=Icta... [more]
MX2_BOVIN2.429e-1939.02Interferon-induced GTP-binding protein Mx2 OS=Bos ... [more]
MX1_HORSE2.429e-1935.32Interferon-induced GTP-binding protein Mx1 OS=Equu... [more]
MXE_DANRE9.231e-1936.36Interferon-induced GTP-binding protein MxE OS=Dani... [more]
MX2_ICTPU1.206e-1836.09Interferon-induced GTP-binding protein Mx2 OS=Icta... [more]
MX_ANAPL2.686e-1837.13Interferon-induced GTP-binding protein Mx OS=Anas ... [more]
MX_CTEID7.814e-1835.47Interferon-induced GTP-binding protein Mx OS=Cteno... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002M17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186371 ID=CN186371; Name=CN186371; organism=Citrus sinensis; type=EST; length=740bp
GCGGTCGAAGCAAAAACTAATCACACAGATCTCCTCTGAACCTCGCCGTT
TCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGATC
ATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTTCGAGAGA
AAATGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTACG
GCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACTC
TCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCAG
TGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTATC
GTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAAGGCAG
CAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAAAGATTTACCGATT
TTGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGATAGAGAGACTGGT
CGTACCAAACAAATCTCGAGTGTACCAATTCATCTCAGCATATATTCCCC
TAATGTTGTCAACTTAACGCTGATTGATCTTCCTGGGCTCACAAAAGTAG
CAGTTGAGGGTCAACCAGACAGTATTGTGCAAGATATTGAGAATATGGTT
CGCTCCTACATTGAGAAGCCCAACTGTATAATTCTTGCAATTTCACCTGC
AAATCAAGATCTTGCCACATCTGATGCAATCAAAATATCT
back to top