CN186371

Overview
NameCN186371
Unique NameCN186371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4344 contig Csv1_Contig4344:66..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX2_MACMU (Interferon-induced GTP-binding protein Mx2 OS=Macaca mulatta GN=MX2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.814e-18
Identity = 62/164 (37.80%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRGSGIVTR PLVL+L K    +               D   V KEI    +   G    IS   I L I SP V +LT+IDLPG+ +VAV  QP  I   I+ +++ YI++   I L + P N D+AT++A+ ++
Sbjct:  117 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKQPYKAWAGRISYQNTEIELQDPGQVEKEIHKAQNVMAGNGLGISHELISLEITSPEVPDLTIIDLPGIARVAVGNQPRDIGLQIKALIKRYIQRQQTINLVVVPCNVDIATTEALSMA 279          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX_CHICK (Interferon-induced GTP-binding protein Mx OS=Gallus gallus GN=MX PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.969e-17
Identity = 58/165 (35.15%), Postives = 90/165 (54.55%), Query Frame = 3
Query:  252 LPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK--RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            LPAIA            LE++ G   LPR  G++TR PL L+L K+    +E+   ++      +  + + V+K I+   D   G    IS   I L I+SP+V +LTLIDLPG+ + AV  QP    Q I+ +++ YI     II+ + P N D+AT++A+K++
Sbjct:  114 LPAIAVIGDRNSGKSSVLEALSGVA-LPRDKGVITRCPLELKLKKMT-APQEWKGVIYYRNTEIQLQNASEVKKAIRKAQDIVAGTNGSISGELISLEIWSPDVPDLTLIDLPGIAREAVGNQPQDNGQQIKTLLKKYIGCKETIIVVVVPCNVDIATTEALKMA 276          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MXC_DANRE (Interferon-induced GTP-binding protein MxC OS=Danio rerio GN=mxc PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.283e-16
Identity = 58/172 (33.72%), Postives = 89/172 (51.74%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGS--------REYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 740
            +LPAIA            LE++ G   LPRG GIVTR PL+L+L K+            ++  E L  P         +   +        G  + IS   I L I S +V +LTLIDLPG+ +VA   QP+ I + I++++  +I++   I L + PAN D+AT++A+K++
Sbjct:   42 NLPAIAVIGDQSSGKSSVLEALSGVA-LPRGIGIVTRCPLILKLKKITRDKNWSGLLTYKDQTEILKEP-------TGIENAVLKAQIALAGTGEGISHEMITLEIQSCDVPDLTLIDLPGIARVATGNQPEDIEKQIKDLIEKFIKRQETISLVVVPANIDIATTEALKMA 205          
BLAST of CN186371 vs. ExPASy Swiss-Prot
Match: MX2_BUBBU (Interferon-induced GTP-binding protein Mx2 OS=Bubalus bubalis GN=MX2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16
Identity = 61/157 (38.85%), Postives = 88/157 (56.05%), Query Frame = 3
Query:  249 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLAT 719
            +LPAIA            LE++ G   LPRGSGI+TR PLVL+L K E        + +I ++   + + V  EI+   +   G  + IS   I+L + SP+V +LTLIDLPG+T+VAVE QP  I   I+ ++   I++   I L + P N D+AT
Sbjct:  114 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIITRCPLVLKLTKRECEWTGKITYRNITQQ-LQNPSEVEWEIRRAQNIIAGNGRGISHELINLEVTSPDVPDLTLIDLPGITRVAVENQPQDIGLQIKALI---IQRQETINLVVVPCNVDIAT 265          
The following BLAST results are available for this feature:
BLAST of CN186371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
MX2_MACMU7.814e-1837.80Interferon-induced GTP-binding protein Mx2 OS=Maca... [more]
MX_CHICK2.969e-1735.15Interferon-induced GTP-binding protein Mx OS=Gallu... [more]
MXC_DANRE3.283e-1633.72Interferon-induced GTP-binding protein MxC OS=Dani... [more]
MX2_BUBBU7.314e-1638.85Interferon-induced GTP-binding protein Mx2 OS=Buba... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186371 ID=CN186371; Name=CN186371; organism=Citrus sinensis; type=EST; length=740bp
GCGGTCGAAGCAAAAACTAATCACACAGATCTCCTCTGAACCTCGCCGTT
TCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGATC
ATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTTCGAGAGA
AAATGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTACG
GCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACTC
TCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCAG
TGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTATC
GTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAAGGCAG
CAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAAAGATTTACCGATT
TTGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGATAGAGAGACTGGT
CGTACCAAACAAATCTCGAGTGTACCAATTCATCTCAGCATATATTCCCC
TAATGTTGTCAACTTAACGCTGATTGATCTTCCTGGGCTCACAAAAGTAG
CAGTTGAGGGTCAACCAGACAGTATTGTGCAAGATATTGAGAATATGGTT
CGCTCCTACATTGAGAAGCCCAACTGTATAATTCTTGCAATTTCACCTGC
AAATCAAGATCTTGCCACATCTGATGCAATCAAAATATCT
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