CN186366

Overview
NameCN186366
Unique NameCN186366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186366 vs. ExPASy Swiss-Prot
Match: ADH6_HUMAN (Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.441e-29
Identity = 61/166 (36.75%), Postives = 103/166 (62.05%), Query Frame = -2
Query:  348 GAVGLAAAEGARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGLPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGE 845
            G VGL+   G + +GA+RIIGVD+N  +F +A++ G TE +NP+D  KP+Q+V+ +MT+ G+D   E  G++  + +A    ++ +GV V+VG+       K       + R+LKG+ FG +K R  +P +V  YM +++ L+  ITH +   +IN+A +LM +G+
Sbjct:  202 GGVGLSVVMGCKAAGAARIIGVDVNKEKFKKAQELGATECLNPQDLKKPIQEVLFDMTDAGIDFCFEAIGNLDVLAAALASCNESYGVCVVVGVLPASVQLKISGQLFFSGRSLKGSVFGGWKSRQHIPKLVADYMAEKLNLDPLITHTLNLDKINEAVELMKTGK 367          
BLAST of CN186366 vs. ExPASy Swiss-Prot
Match: FADH_AMYME (NAD/mycothiol-dependent formaldehyde dehydrogenase OS=Amycolatopsis methanolica PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.807e-17
Identity = 53/174 (30.46%), Postives = 91/174 (52.30%), Query Frame = -2
Query:  330 GAVGLAAAEGARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIAEMTNG-GVDRSVECTGSVQAMISAFECVHDGWGVAVLVGLPNKDDAFKTHPMNLLNER-TLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 845
            GAVG A   GAR++GA++II VD +  +   A + G T  VN  + D  V + +  +T G G D  ++  G  +    AF    D  G  VLVG+P  D   +   ++  +    LK +++G+  P  D P +++ ++   + L+KF+T  +   ++ KAF  M +GE +R ++
Sbjct:  188 GAVGDAVIAGARLAGANKIIAVDRDAKKLEWATELGATHTVNATETD--VVEAVQALTGGFGADVVIDAVGRPETWKQAFYA-RDLAGTVVLVGVPTPDMRLEMPLLDFFSRGGALKSSWYGDCLPERDFPVLIDLHLQGRLPLDKFVTERISLDDVEKAFHTMHAGEVLRSVV 358          
The following BLAST results are available for this feature:
BLAST of CN186366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ADH6_HUMAN1.441e-2936.75Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE... [more]
FADH_AMYME4.807e-1730.46NAD/mycothiol-dependent formaldehyde dehydrogenase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186366 ID=CN186366; Name=CN186366; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTTTTTTTTTAGAAAGAAGATTTACACGAAAATCTTTATTACAT
AAGCTACAAAAAGAAGTACAGTAAGAAATAGGTAGAAAACACACCTCTTT
GTACGCCATATGCAGCAAGTCATCAAACAGAAAAACAAAAATAAAAAGGG
ACTGTAAGAAATATGTAGAAAACACAACTCTTTGAAAGCCATTCGCAGCA
AGTCATCAAACATACAGCATAAATTACTTATTCTCGGGGTAATATATAAC
TTGGAAAATTATGTGATCATCTTCATTCTGCCTCCATTAGATTGATCAGC
AACAGCAGACACATCTAACCATCCATGCGAATGATGCACCTAATGCTTTC
TCCCGAAAGCATGAGGTCAAATGCCTTGTTTATCTCCGAGAAGGGCACAG
CATGAGTGATGAATTTCTCAAGCTCCATCTCCTTGTTCATGTATTTTTCA
ACAACTGAAGGAAGATCAGAGCGAGGTTTGTAGTTGCCAAAGAAGGTACC
CTTAAGAGTCCTCTCATTAAGCAGATTCATGGGATGAGTCTTGAATGCAT
CATCTTTGTTTGGCAAACCCACAAGCACAGCAACACCCCAACCATCGTGA
ACGCATTCAAATGCTGAGATCATGGCCTGGACGCTTCCAGTACATTCAAC
ACTTCTATCCACTCCACCATTGGTCATTTCAGCAATCACCTGTTGAACAG
GTTTGTCATAATCTTTTGGATTCACAAACTCGGTAACCCCAAACTTCTTG
GCTTCATTGAATCTGCTTGGGTTCAAATCAACACCAATGATCCTGGAAGC
CCCTGATACTCTTGCCCCTTCGGCAGCAGCAAGGCCAACTGCACCC
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