CN186366

Overview
NameCN186366
Unique NameCN186366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186366 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.365e-42
Identity = 80/174 (45.98%), Postives = 118/174 (67.82%), Query Frame = -2
Query:  324 GAVGLAAAEGARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGLPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRM 845
            GAVGLAA  G RV+GASRII +D NP +F +A+ FG T+ V P   DKP+ QV+ EMT+GG+D + EC G+V  M +A E  H GWGV+V++G+        T P  L+  RT KG  FG +K    +P +V+ YM  ++ +++F++H++PF  IN+AFDLM +G+SIR ++++
Sbjct:  203 GAVGLAAIMGCRVAGASRIIAIDRNPDKFEKARIFGATDCVVPDASDKPISQVLGEMTDGGLDYTFECVGNVGIMRAALESCHKGWGVSVILGVAGGGQEISTRPFQLVTGRTWKGAAFGGWKSVESVPKLVDDYMAGKIMVDEFVSHSLPFDSINEAFDLMHAGKSIRTVLQL 376          
BLAST of CN186366 vs. ExPASy Swiss-Prot
Match: ADHX_DROME (Alcohol dehydrogenase class-3 OS=Drosophila melanogaster GN=Fdh PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 7.365e-42
Identity = 83/175 (47.43%), Postives = 117/175 (66.86%), Query Frame = -2
Query:  327 GAVGLAAAEGARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDY-DK-PVQQVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGLPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIR 845
            GAVGLA   G + +GA +I G+D+NP +F  AKKFG T+FVNPKD  DK  +Q  + ++T+GG D + EC G+V  M SA E  H GWG +V++G+        T P  L+  R  KG+ FG ++  SD+P +VE Y+ K++ +++FITH +P S+IN+AFDLM  GESIR II+
Sbjct:  204 GAVGLAVGLGCKKAGAGKIYGIDINPDKFELAKKFGFTDFVNPKDVADKGSIQNYLIDLTDGGFDYTFECIGNVNTMRSALEATHKGWGTSVVIGVAGAGQEISTRPFQLVVGRVWKGSAFGGWRSVSDVPKLVEDYLKKDLLVDEFITHELPLSQINEAFDLMHKGESIRSIIK 378          
BLAST of CN186366 vs. ExPASy Swiss-Prot
Match: FRMA_ECOUT (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.619e-42
Identity = 78/173 (45.09%), Postives = 110/173 (63.58%), Query Frame = -2
Query:  327 GAVGLAAAEGARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGLPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIR 845
            GA+GLA  +GAR + A RII +D NP +F  A++FG T+ +NP DYDKP++ V+ ++   G+D + EC G+V  M +A E  H GWG +V++G+        T P  L+  R  KG+ FG  K RS LP +VE  M  +++LE F+TH +   EIN AFDLM  G+SIR +IR
Sbjct:  196 GAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIR 368          
BLAST of CN186366 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.619e-42
Identity = 78/173 (45.09%), Postives = 110/173 (63.58%), Query Frame = -2
Query:  327 GAVGLAAAEGARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGLPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIR 845
            GA+GLA  +GAR + A RII +D NP +F  A++FG T+ +NP DYDKP++ V+ ++   G+D + EC G+V  M +A E  H GWG +V++G+        T P  L+  R  KG+ FG  K RS LP +VE  M  +++LE F+TH +   EIN AFDLM  G+SIR +IR
Sbjct:  196 GAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIR 368          
BLAST of CN186366 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL5 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.619e-42
Identity = 78/173 (45.09%), Postives = 110/173 (63.58%), Query Frame = -2
Query:  327 GAVGLAAAEGARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGLPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIR 845
            GA+GLA  +GAR + A RII +D NP +F  A++FG T+ +NP DYDKP++ V+ ++   G+D + EC G+V  M +A E  H GWG +V++G+        T P  L+  R  KG+ FG  K RS LP +VE  M  +++LE F+TH +   EIN AFDLM  G+SIR +IR
Sbjct:  196 GAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIR 368          
BLAST of CN186366 vs. ExPASy Swiss-Prot
Match: FRMA_ECOK1 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=frmA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.619e-42
Identity = 78/173 (45.09%), Postives = 110/173 (63.58%), Query Frame = -2
Query:  327 GAVGLAAAEGARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGLPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIR 845
            GA+GLA  +GAR + A RII +D NP +F  A++FG T+ +NP DYDKP++ V+ ++   G+D + EC G+V  M +A E  H GWG +V++G+        T P  L+  R  KG+ FG  K RS LP +VE  M  +++LE F+TH +   EIN AFDLM  G+SIR +IR
Sbjct:  196 GAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIR 368          
BLAST of CN186366 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.143e-41
Identity = 76/172 (44.19%), Postives = 112/172 (65.12%), Query Frame = -2
Query:  330 GAVGLAAAEGARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGLPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 845
            GA+GLA  +GAR + A RII +D NP++F  AK+FG T+ +NP DYDKP++ V+ ++   G+D + EC G+V  M  A E  H GWG ++++G+        T P  L+  R  KG+ FG  K RS+LP +VE  M  +++LE F+TH +P  +IN+AF+LM  G+SIR +I
Sbjct:  205 GAIGLAVVQGARQAKAGRIIAIDTNPAKFELAKQFGATDCLNPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRQALESAHRGWGQSIIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGVKGRSELPQMVEDSMKGDIQLEPFVTHTMPLDKINEAFELMHEGKSIRTVI 376          
BLAST of CN186366 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLI (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain K12) GN=frmA PE=1 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 2.143e-41
Identity = 78/173 (45.09%), Postives = 111/173 (64.16%), Query Frame = -2
Query:  327 GAVGLAAAEGARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGLPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIR 845
            GA+GLA  +GAR + A RII +D NP +F+ A++FG T+ +NP DYDKP++ V+ ++   G+D + EC G+V  M +A E  H GWG +V++G+        T P  L+  R  KG+ FG  K RS LP +VE  M  +++LE F+TH +   EIN AFDLM  G+SIR +IR
Sbjct:  196 GAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAVAGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIR 368          
BLAST of CN186366 vs. ExPASy Swiss-Prot
Match: ADH1A_MACMU (Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1A PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 2.143e-41
Identity = 78/172 (45.35%), Postives = 115/172 (66.86%), Query Frame = -2
Query:  330 GAVGLAAAEGARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGLPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 845
            G VGL+A  G + +GA+RII VD+N  +F +AK+ G TE +NP+DY KP+Q+V+ EMT+GGVD S E  G +  M+++  C H+  G +V+VG+P        +PM LL  RT KG  +G +K + D+P +V  +M K+  L+  ITH +PF +IN+ FDL+ SG+SIR I+
Sbjct:  202 GGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAVYGGFKSKEDIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLRSGKSIRTIL 373          
BLAST of CN186366 vs. ExPASy Swiss-Prot
Match: ADHX_DICDI (Alcohol dehydrogenase class-3 OS=Dictyostelium discoideum GN=adh5 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.655e-41
Identity = 81/177 (45.76%), Postives = 118/177 (66.67%), Query Frame = -2
Query:  324 GAVGLAAAEGARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNP-KDYD--KPVQQVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGLPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRM 845
            GAVGL+ A+GA   GA RIIG+D N ++F   K FG TEF+NP KD    K +QQ + ++T+GGVD S EC G+V  M +A EC H GWGV+ +VG+        T P  L+  R  KG+ FG  K RS LPS+++KYM+K++++++++T   P +EIN AFD+M  G+S+R ++ +
Sbjct:  203 GAVGLSVAQGAVDCGAKRIIGIDNNETKFGPGKDFGCTEFINPSKDLPEGKTIQQHLVDITDGGVDYSFECIGNVNVMRAALECCHKGWGVSTIVGVAPAGAEISTRPFQLVTGRVWKGSAFGGVKSRSQLPSIIDKYMDKKLKVDEYVTFTYPLNEINTAFDVMHEGKSLRSVVNL 379          
The following BLAST results are available for this feature:
BLAST of CN186366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ADHX_MYXGL7.365e-4245.98Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]
ADHX_DROME7.365e-4247.43Alcohol dehydrogenase class-3 OS=Drosophila melano... [more]
FRMA_ECOUT9.619e-4245.09S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOL69.619e-4245.09S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOL59.619e-4245.09S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOK19.619e-4245.09S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_HAEIN2.143e-4144.19S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
FRMA_ECOLI2.143e-4145.09S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH1A_MACMU2.143e-4145.35Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1... [more]
ADHX_DICDI3.655e-4145.76Alcohol dehydrogenase class-3 OS=Dictyostelium dis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002M15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186366 ID=CN186366; Name=CN186366; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTTTTTTTTTAGAAAGAAGATTTACACGAAAATCTTTATTACAT
AAGCTACAAAAAGAAGTACAGTAAGAAATAGGTAGAAAACACACCTCTTT
GTACGCCATATGCAGCAAGTCATCAAACAGAAAAACAAAAATAAAAAGGG
ACTGTAAGAAATATGTAGAAAACACAACTCTTTGAAAGCCATTCGCAGCA
AGTCATCAAACATACAGCATAAATTACTTATTCTCGGGGTAATATATAAC
TTGGAAAATTATGTGATCATCTTCATTCTGCCTCCATTAGATTGATCAGC
AACAGCAGACACATCTAACCATCCATGCGAATGATGCACCTAATGCTTTC
TCCCGAAAGCATGAGGTCAAATGCCTTGTTTATCTCCGAGAAGGGCACAG
CATGAGTGATGAATTTCTCAAGCTCCATCTCCTTGTTCATGTATTTTTCA
ACAACTGAAGGAAGATCAGAGCGAGGTTTGTAGTTGCCAAAGAAGGTACC
CTTAAGAGTCCTCTCATTAAGCAGATTCATGGGATGAGTCTTGAATGCAT
CATCTTTGTTTGGCAAACCCACAAGCACAGCAACACCCCAACCATCGTGA
ACGCATTCAAATGCTGAGATCATGGCCTGGACGCTTCCAGTACATTCAAC
ACTTCTATCCACTCCACCATTGGTCATTTCAGCAATCACCTGTTGAACAG
GTTTGTCATAATCTTTTGGATTCACAAACTCGGTAACCCCAAACTTCTTG
GCTTCATTGAATCTGCTTGGGTTCAAATCAACACCAATGATCCTGGAAGC
CCCTGATACTCTTGCCCCTTCGGCAGCAGCAAGGCCAACTGCACCC
back to top