CN186361

Overview
NameCN186361
Unique NameCN186361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186361_ssr71 microsatellite CN186361_ssr71:71..82. BLAST: Citrus ESTs to Prunus persica proteins V1
CN186361_ssr83 microsatellite CN186361_ssr83:83..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5724 contig Csv1_Contig5724:19..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: MTNB_BACCN (Methylthioribulose-1-phosphate dehydratase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=mtnB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.056e-16
Identity = 62/204 (30.39%), Postives = 93/204 (45.59%), Query Frame = 2
Query:  149 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKL 760
            +SEL +      W   T G+I+IKV  + +       L+S SG  K +  P+D  ++   G  +                    L    Y   +AG V+H H  ++ ++T  N   KE  I + E+IK +        + +PIIEN A+   L ++  K I +     AVL+RNHGI VWG    +AK + E Y +LF   IKL
Sbjct:   11 LSELKKELTNRNWFPATSGNISIKVSHEPLT-----FLISASGKDKTKTTPDDFLLVDHQGNPVLETELRPSAETI--------LHTHIYNHTNAGCVLHVHTTDNNVIT--NLYEKEVMIRNQEIIKALNIWEEGATIHIPIIENYAHIPLLGEAFKKHIQS--DCGAVLIRNHGITVWGKDSFDAKKRLEAYEFLFQFHIKL 197          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: MTNB_EXISA (Methylthioribulose-1-phosphate dehydratase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=mtnB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.344e-15
Identity = 59/219 (26.94%), Postives = 101/219 (46.12%), Query Frame = 2
Query:  128 VKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELV---VPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGL 775
            V+E  V ++++        W  GT G++ I+V DD +       L++ SG  K +   ED  ++   G ++                    L ++ +   +A   +H H +++ +++ +         T  E+IK +   GY++E     +PIIEN A    L  + A  +     A AVL+RNHGI VWG++   AK   E Y +LF  ++KL  LG+
Sbjct:    3 VQERWVELADIKDELAARDWFPGTSGNLAIRVSDDPLT-----FLVTASGRDKRKRTNEDFVLVDATGQLIGEQSGKPSAETL--------LHVEIFNNTNATCSLHVHTVDNNVISELYAAQGHVTFTGQEIIKAL---GYWEETASVRIPIIENHADIPTLARAFAPHVTG--DAGAVLIRNHGITVWGETPAAAKRYLEAYEFLFSYSLKLRALGV 203          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: MTNB_BACWK (Methylthioribulose-1-phosphate dehydratase OS=Bacillus weihenstephanensis (strain KBAB4) GN=mtnB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.061e-15
Identity = 60/204 (29.41%), Postives = 93/204 (45.59%), Query Frame = 2
Query:  149 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKL 760
            +SE+ +   T  W   T G+I+IKV  D +       L++ SG  K +  P+D  +++  G  +                    L    Y   +AG V+H H  ++ ++T  N  S    + + E+IK +        + +PIIEN A+   L +   K I     + AVL+RNHGI VWG    +AK + E Y +LF   IKL
Sbjct:   11 LSEIKKELTTRNWFPATSGNISIKVSHDPLT-----FLITASGKDKTKTTPDDFLLVNHQGIPVLETELRPSAETI--------LHTHIYNNTNAGCVLHVHTTDNNVIT--NLYSDAVTLQNQEIIKALDIWEEGATINIPIIENDAHIPTLGEKFRKHIQG--DSGAVLIRNHGITVWGRDSFDAKKRLEAYEFLFQFHIKL 197          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: MTNB_PERMH (Methylthioribulose-1-phosphate dehydratase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=mtnB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.519e-14
Identity = 52/200 (26.00%), Postives = 91/200 (45.50%), Query Frame = 2
Query:  146 LISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFD 745
            +++++    Y  GW   T G+++ K+HDD +        ++ SG  K  +  ED+  +  +   +               S    +  + Y++ DAG VIH H + +  ++ +        I  MEMIK +        + VPIIEN    + L +   K+I+  P+   +L+RNHGIY WG     AK   E + ++F+
Sbjct:   16 ILNDIKVKLYNRGWFPATSGNLSYKLHDDPL-----YFAITSSGKDKGTVTHEDVIFVDKDAKPIEKTKLKP--------SAETKVHSQIYQRTDAGCVIHIHTVNNNFISQLYFEDGYVPIKDMEMIKALDIWKEDAFIKVPIIENFFDLDRLAEEAGKSIN--PEVPGLLIRNHGIYAWGRDEFEAKRHVEAFEFIFE 200          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: MTNB_BACCZ (Methylthioribulose-1-phosphate dehydratase OS=Bacillus cereus (strain ZK / E33L) GN=mtnB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.984e-14
Identity = 59/204 (28.92%), Postives = 93/204 (45.59%), Query Frame = 2
Query:  149 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKL 760
            +SE+ +   T  W   T G+I+IKV  + +       L++ SG  K +  P+D  ++   G  +                    L    Y   +AG V+H H  ++ ++T  N  S    + + E+IK +        + +PIIEN A+   L ++  K I     + AVL+RNHGI VWG    +AK + E Y +LF   IKL
Sbjct:   11 LSEIKKELTTRNWFPATSGNISIKVSHEPLT-----FLITASGKDKTKTTPDDFLLVDHLGVPVLETELRPSAETI--------LHTHIYNNTNAGCVLHIHTTDNNVIT--NLYSDAVTLQNQEIIKALDIWEEGATIHIPIIENHAHIPTLGENFRKHIQG--DSGAVLIRNHGITVWGRDSFDAKKRLEAYEFLFQFHIKL 197          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: MTNB_BACCR (Methylthioribulose-1-phosphate dehydratase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=mtnB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.984e-14
Identity = 59/204 (28.92%), Postives = 93/204 (45.59%), Query Frame = 2
Query:  149 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKL 760
            +SE+ +   T  W   T G+I+IKV  + +       L++ SG  K +  P+D  ++   G  +                    L    Y   +AG V+H H  ++ ++T  N  S    + + E+IK +        + +PIIEN A+   L ++  K I     + AVL+RNHGI VWG    +AK + E Y +LF   IKL
Sbjct:   11 LSEIKKELTTRNWFPATSGNISIKVSHEPLT-----FLITASGKDKTKTTPDDFLLVDHVGVPVLETELRPSAETI--------LHTHIYNNTNAGCVLHVHTTDNNVIT--NLYSDAVTLQNQEIIKALDIWEEGATIHIPIIENHAHIPTLGENFRKHIQG--DSGAVLIRNHGITVWGRDSFDAKKRLEAYEFLFQFHIKL 197          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: MTNB_BACCQ (Methylthioribulose-1-phosphate dehydratase OS=Bacillus cereus (strain Q1) GN=mtnB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.984e-14
Identity = 59/204 (28.92%), Postives = 93/204 (45.59%), Query Frame = 2
Query:  149 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKL 760
            +SE+ +   T  W   T G+I+IKV  + +       L++ SG  K +  P+D  ++   G  +                    L    Y   +AG V+H H  ++ ++T  N  S    + + E+IK +        + +PIIEN A+   L ++  K I     + AVL+RNHGI VWG    +AK + E Y +LF   IKL
Sbjct:   11 LSEIKKELTTRNWFPATSGNISIKVSHEPLT-----FLITASGKDKTKTTPDDFLLVDHLGVPVLETELRPSAETI--------LHTHIYNNTNAGCVLHVHTTDNNVIT--NLYSDAVTLQNQEIIKALDIWEEDATIHIPIIENHAHIPTLGENFRKHIQG--DSGAVLIRNHGITVWGRDSFDAKKRLEAYEFLFQFHIKL 197          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: MTNB_BACC7 (Methylthioribulose-1-phosphate dehydratase OS=Bacillus cereus (strain AH187) GN=mtnB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.984e-14
Identity = 59/204 (28.92%), Postives = 93/204 (45.59%), Query Frame = 2
Query:  149 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKL 760
            +SE+ +   T  W   T G+I+IKV  + +       L++ SG  K +  P+D  ++   G  +                    L    Y   +AG V+H H  ++ ++T  N  S    + + E+IK +        + +PIIEN A+   L ++  K I     + AVL+RNHGI VWG    +AK + E Y +LF   IKL
Sbjct:   11 LSEIKKELTTRNWFPATSGNISIKVSHEPLT-----FLITASGKDKTKTTPDDFLLVDHLGVPVLETELRPSAETI--------LHTHIYNNTNAGCVLHVHTTDNNVIT--NLYSDAVTLQNQEIIKALDIWEEDATIHIPIIENHAHIPTLGENFRKHIQG--DSGAVLIRNHGITVWGRDSFDAKKRLEAYEFLFQFHIKL 197          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: MTNB_BACC4 (Methylthioribulose-1-phosphate dehydratase OS=Bacillus cereus (strain B4264) GN=mtnB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.984e-14
Identity = 59/204 (28.92%), Postives = 93/204 (45.59%), Query Frame = 2
Query:  149 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKL 760
            +SE+ +   T  W   T G+I+IKV  + +       L++ SG  K +  P+D  ++   G  +                    L    Y   +AG V+H H  ++ ++T  N  S    + + E+IK +        + +PIIEN A+   L ++  K I     + AVL+RNHGI VWG    +AK + E Y +LF   IKL
Sbjct:   11 LSEIKKELTTRNWFPATSGNISIKVSHEPLT-----FLITASGKDKTKTTPDDFLLVDHVGVPVLETELRPSAETI--------LHTHIYNNTNAGCVLHVHTTDNNVIT--NLYSDAVTLQNQEIIKALDIWEEGATIHIPIIENHAHIPTLGENFRKHIQG--DSGAVLIRNHGITVWGRDSFDAKKRLEAYEFLFQFHIKL 197          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: MTNB_BACC3 (Methylthioribulose-1-phosphate dehydratase OS=Bacillus cereus (strain 03BB102) GN=mtnB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.984e-14
Identity = 59/204 (28.92%), Postives = 93/204 (45.59%), Query Frame = 2
Query:  149 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKL 760
            +SE+ +   T  W   T G+I+IKV  + +       L++ SG  K +  P+D  ++   G  +                    L    Y   +AG V+H H  ++ ++T  N  S    + + E+IK +        + +PIIEN A+   L ++  K I     + AVL+RNHGI VWG    +AK + E Y +LF   IKL
Sbjct:   11 LSEIKKELTTRNWFPATSGNISIKVSHEPLT-----FLITASGKDKTKTTPDDFLLVDHLGVPVLETELRPSAETI--------LHTHIYNNTNAGCVLHVHTTDNNVIT--NLYSDAVTLQNQEIIKALDIWEEGATIHIPIIENHAHIPTLGENFRKHIQG--DSGAVLIRNHGITVWGRDSFDAKKRLEAYEFLFQFHIKL 197          
The following BLAST results are available for this feature:
BLAST of CN186361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
MTNB_BACCN8.056e-1630.39Methylthioribulose-1-phosphate dehydratase OS=Baci... [more]
MTNB_EXISA2.344e-1526.94Methylthioribulose-1-phosphate dehydratase OS=Exig... [more]
MTNB_BACWK3.061e-1529.41Methylthioribulose-1-phosphate dehydratase OS=Baci... [more]
MTNB_PERMH1.519e-1426.00Methylthioribulose-1-phosphate dehydratase OS=Pers... [more]
MTNB_BACCZ1.984e-1428.92Methylthioribulose-1-phosphate dehydratase OS=Baci... [more]
MTNB_BACCR1.984e-1428.92Methylthioribulose-1-phosphate dehydratase OS=Baci... [more]
MTNB_BACCQ1.984e-1428.92Methylthioribulose-1-phosphate dehydratase OS=Baci... [more]
MTNB_BACC71.984e-1428.92Methylthioribulose-1-phosphate dehydratase OS=Baci... [more]
MTNB_BACC41.984e-1428.92Methylthioribulose-1-phosphate dehydratase OS=Baci... [more]
MTNB_BACC31.984e-1428.92Methylthioribulose-1-phosphate dehydratase OS=Baci... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002M12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186361 ID=CN186361; Name=CN186361; organism=Citrus sinensis; type=EST; length=786bp
GCGGTAAAAAGCTCTCAAAGAGAACAGCTTCCTATCAAGAGCAAAGCAAA
TGGCAACGTTGGCAGTGAACGGAGGAGGAGGAGCAGCAGCAGCAACGCAT
ACGCAGGCTTATTTGGAGGGCAGAGCAGTGAAGGAGACGAGGGTGTTGAT
ATCAGAGCTCTGCCGTCATTTCTACACCCTTGGATGGGTTTCTGGGACAG
GTGGCAGCATCACCATCAAGGTCCATGATGACTCCATCCCTAAACCTCAA
CAGCTCATCCTCATGTCACCTTCTGGTGTGCAGAAGGAGAGAATGGAACC
AGAGGACATGTATGTGTTATCTGGAAATGGGACTATGTTGTCTTCACCAT
CTCCAAAACCGTACCCACATAAGCCTCCCAAGTGTTCAGATTGTGCTCCT
CTTTTCATGAAGGCATACGAGAAACGTGATGCAGGGGCTGTTATCCACAG
CCATGGCATAGAATCTTGCCTTGTGACAATGATCAATCCAATGTCAAAAG
AATTTCGTATAACTCACATGGAGATGATAAAAGGAATCAAAGGGCATGGT
TACTATGATGAACTCGTTGTTCCAATTATAGAGAACACAGCTTATGAAAA
TGAGCTCACTGATTCTCTTGCTAAAGCGATAGATGCCTATCCAAAAGCAA
CAGCTGTGCTTGTTCGTAATCATGGCATATATGTTTGGGGAGACTCCTGG
ATCAATGCTAAAACTCAGGCTGAATGTTATCACTATCTCTTTGATGCTGC
TATCAAACTCCATCAACTGGGCCTGGACTGGTCTAC
back to top