CN186359

Overview
NameCN186359
Unique NameCN186359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.547e-37
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCMISN+TA+AEVFSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA6_ARATH (Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.547e-37
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.547e-37
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRID KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDRKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.547e-37
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA1_PEA (Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.547e-37
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.547e-37
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.547e-37
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.632e-37
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA LEK
Sbjct:  355 INYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAXLEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.632e-37
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TA+AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.632e-37
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAF+HWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLAALEK 430
The following BLAST results are available for this feature:
BLAST of CN186359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA_CHLVU3.547e-3796.05Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA ... [more]
TBA6_ARATH3.547e-3797.37Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=T... [more]
TBA2_ELEIN3.547e-3798.68Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ... [more]
TBA2_ARATH3.547e-3797.37Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali... [more]
TBA1_PEA3.547e-3797.37Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE... [more]
TBA1_GOSHI3.547e-3797.37Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA1_ANEPH3.547e-3797.37Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUB... [more]
TBA_AVESA4.632e-3797.37Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 S... [more]
TBAD_PHYPO4.632e-3796.05Tubulin alpha-1A chain OS=Physarum polycephalum GN... [more]
TBA2_GOSHI4.632e-3796.05Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186359 ID=CN186359; Name=CN186359; organism=Citrus sinensis; type=EST; length=571bp
GCGGTGTATTAACTATCAGCCTCCAACTGTTGTACCTGGAGGTGACCTGG
CCAAGGTTCAGCGAGCTGTTTGCATGATCAGCAACAACACAGCAGTGGCT
GAAGTGTTCTCTCGCATTGATCACAAATTCGATCTCATGTATGCCAAGAG
GGCATTCGTCCACTGGTACGTTGGTGAAGGCATGGAGGAAGGTGAATTCT
CAGAAGCACGTGAAGATCTGGCTGCTCTTGAGAAAGATTATGAGGAAGTT
GGTGCAGAAGGAGTTGATGATGAGGATGATGGTGAAGAATATTGATGTAC
TGCTTCTGCTGTAAACTATGAAGATGAGAAATATGTACATTTTGCAAGGG
CATTTATGTGGAAATTTGTTGAGAAATGTGAGGGTCTGTACTCAATGCTT
AGTCCCTTGCCTTTTTATTGCTTTGTTTCTTTCGTGTAGACTATTTCCTT
TTGCTGTTGAACTCTCAAAATTGTGCCAATATTGTGATTCGTGGTGCTTT
TAATGGTATCAGTGAAGTGATATTTTAGAATTATAAGTTGCATATTGTTT
CTNANAAAAAAAAAAAAAAAA
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