CN186359

Overview
NameCN186359
Unique NameCN186359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.760e-36
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKV RAVCMISN+TA+AEVFSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.299e-36
Identity = 71/76 (93.42%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCMI+N+TA+AEVF+RIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMIANSTAIAEVFARIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA_TRYBR (Tubulin alpha chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.299e-36
Identity = 71/76 (93.42%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCMI+N+TA+AEVF+RIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMIANSTAIAEVFARIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.002e-36
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPP+VVPGGDLAKVQRAVCMISN+T+V EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.002e-36
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPP+VVPGGDLAKVQRAVCMISN+T+V EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA1_MAIZE (Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.002e-36
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPP+VVPGGDLAKVQRAVCMISN+T+V EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA1_ELEIN (Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.002e-36
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPP+VVPGGDLAKVQRAVCMISN+T+V EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.921e-36
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVP GDLAKV RAVCMISN+TA+AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  354 INYQPPTVVPSGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 429
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA_WHEAT (Tubulin alpha chain OS=Triticum aestivum GN=TUBA PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.688e-36
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPP VVPGGDLAKVQRAVCMISN+T+V EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPGVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA2_HORVU (Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.688e-36
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPP VVPGGDLAKVQRAVCMISN+T+V EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPGVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
The following BLAST results are available for this feature:
BLAST of CN186359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA_NEOCA1.760e-3694.74Tubulin alpha chain OS=Neospora caninum GN=TUBA PE... [more]
TBA_TRYCR2.299e-3693.42Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1[more]
TBA_TRYBR2.299e-3693.42Tubulin alpha chain OS=Trypanosoma brucei rhodesie... [more]
TBA3_HORVU3.002e-3694.74Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 ... [more]
TBA2_MAIZE3.002e-3694.74Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV... [more]
TBA1_MAIZE3.002e-3694.74Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV... [more]
TBA1_ELEIN3.002e-3694.74Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 ... [more]
TBA2_STYLE3.921e-3694.74Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA_WHEAT6.688e-3694.74Tubulin alpha chain OS=Triticum aestivum GN=TUBA P... [more]
TBA2_HORVU6.688e-3694.74Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186359 ID=CN186359; Name=CN186359; organism=Citrus sinensis; type=EST; length=571bp
GCGGTGTATTAACTATCAGCCTCCAACTGTTGTACCTGGAGGTGACCTGG
CCAAGGTTCAGCGAGCTGTTTGCATGATCAGCAACAACACAGCAGTGGCT
GAAGTGTTCTCTCGCATTGATCACAAATTCGATCTCATGTATGCCAAGAG
GGCATTCGTCCACTGGTACGTTGGTGAAGGCATGGAGGAAGGTGAATTCT
CAGAAGCACGTGAAGATCTGGCTGCTCTTGAGAAAGATTATGAGGAAGTT
GGTGCAGAAGGAGTTGATGATGAGGATGATGGTGAAGAATATTGATGTAC
TGCTTCTGCTGTAAACTATGAAGATGAGAAATATGTACATTTTGCAAGGG
CATTTATGTGGAAATTTGTTGAGAAATGTGAGGGTCTGTACTCAATGCTT
AGTCCCTTGCCTTTTTATTGCTTTGTTTCTTTCGTGTAGACTATTTCCTT
TTGCTGTTGAACTCTCAAAATTGTGCCAATATTGTGATTCGTGGTGCTTT
TAATGGTATCAGTGAAGTGATATTTTAGAATTATAAGTTGCATATTGTTT
CTNANAAAAAAAAAAAAAAAA
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