CN186359

Overview
NameCN186359
Unique NameCN186359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA_TETPY (Tubulin alpha chain OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.141e-35
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQP TVVPGGDLAKV RAVCMISN+TA+AEVFSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPSTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.490e-35
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKV RAVCMISN+TA+AEVFSR+D KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDQKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.490e-35
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKV RAVCMISN+TA+AEVFSR+D KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDQKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.490e-35
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TAVAE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.490e-35
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQ P+VVPGGDLAKVQRA+CMISN TA+AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQAPSVVPGGDLAKVQRALCMISNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA2_CHLRE (Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.490e-35
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPG DLAKVQRAVCMISN+TA+ E+FSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGVDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA_LYTPI (Tubulin alpha chain (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.946e-35
Identity = 69/76 (90.79%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:   65 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 140
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA_LEPDS (Tubulin alpha chain OS=Lepidoglyphus destructor PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.946e-35
Identity = 69/76 (90.79%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA_BOMMO (Tubulin alpha chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.946e-35
Identity = 69/76 (90.79%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.946e-35
Identity = 69/76 (90.79%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
The following BLAST results are available for this feature:
BLAST of CN186359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA_TETPY1.141e-3593.42Tubulin alpha chain OS=Tetrahymena pyriformis PE=3... [more]
TBA_PLAYO1.490e-3593.42Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]
TBA_PLAFK1.490e-3593.42Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]
TBA_ENTDO1.490e-3592.11Tubulin alpha chain OS=Enteroctopus dofleini PE=2 ... [more]
TBAN_PHYPO1.490e-3593.42Tubulin alpha-1B chain OS=Physarum polycephalum GN... [more]
TBA2_CHLRE1.490e-3592.11Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii... [more]
TBA_LYTPI1.946e-3590.79Tubulin alpha chain (Fragment) OS=Lytechinus pictu... [more]
TBA_LEPDS1.946e-3590.79Tubulin alpha chain OS=Lepidoglyphus destructor PE... [more]
TBA_BOMMO1.946e-3590.79Tubulin alpha chain OS=Bombyx mori PE=2 SV=1[more]
TBAT_ONCMY1.946e-3590.79Tubulin alpha chain, testis-specific OS=Oncorhynch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186359 ID=CN186359; Name=CN186359; organism=Citrus sinensis; type=EST; length=571bp
GCGGTGTATTAACTATCAGCCTCCAACTGTTGTACCTGGAGGTGACCTGG
CCAAGGTTCAGCGAGCTGTTTGCATGATCAGCAACAACACAGCAGTGGCT
GAAGTGTTCTCTCGCATTGATCACAAATTCGATCTCATGTATGCCAAGAG
GGCATTCGTCCACTGGTACGTTGGTGAAGGCATGGAGGAAGGTGAATTCT
CAGAAGCACGTGAAGATCTGGCTGCTCTTGAGAAAGATTATGAGGAAGTT
GGTGCAGAAGGAGTTGATGATGAGGATGATGGTGAAGAATATTGATGTAC
TGCTTCTGCTGTAAACTATGAAGATGAGAAATATGTACATTTTGCAAGGG
CATTTATGTGGAAATTTGTTGAGAAATGTGAGGGTCTGTACTCAATGCTT
AGTCCCTTGCCTTTTTATTGCTTTGTTTCTTTCGTGTAGACTATTTCCTT
TTGCTGTTGAACTCTCAAAATTGTGCCAATATTGTGATTCGTGGTGCTTT
TAATGGTATCAGTGAAGTGATATTTTAGAATTATAAGTTGCATATTGTTT
CTNANAAAAAAAAAAAAAAAA
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