CN186359

Overview
NameCN186359
Unique NameCN186359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA_ONCKE (Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.319e-35
Identity = 68/76 (89.47%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  349 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 424
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.319e-35
Identity = 68/76 (89.47%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.319e-35
Identity = 68/76 (89.47%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.319e-35
Identity = 68/76 (89.47%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.319e-35
Identity = 68/76 (89.47%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 3.319e-35
Identity = 68/76 (89.47%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA1_CHICK (Tubulin alpha-1 chain (Fragment) OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.319e-35
Identity = 68/76 (89.47%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  316 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 391
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA1D_BOVIN (Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.319e-35
Identity = 68/76 (89.47%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA1C_MOUSE (Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.319e-35
Identity = 68/76 (89.47%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA1C_CRIGR (Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.319e-35
Identity = 68/76 (89.47%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
The following BLAST results are available for this feature:
BLAST of CN186359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA_ONCKE3.319e-3589.47Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1[more]
TBA4A_RAT3.319e-3589.47Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tub... [more]
TBA4A_MOUSE3.319e-3589.47Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P... [more]
TBA4A_MACFA3.319e-3589.47Tubulin alpha-4A chain OS=Macaca fascicularis GN=T... [more]
TBA4A_HUMAN3.319e-3589.47Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
TBA4A_BOVIN3.319e-3589.47Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA1_CHICK3.319e-3589.47Tubulin alpha-1 chain (Fragment) OS=Gallus gallus ... [more]
TBA1D_BOVIN3.319e-3589.47Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=... [more]
TBA1C_MOUSE3.319e-3589.47Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c P... [more]
TBA1C_CRIGR3.319e-3589.47Tubulin alpha-1C chain OS=Cricetulus griseus GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186359 ID=CN186359; Name=CN186359; organism=Citrus sinensis; type=EST; length=571bp
GCGGTGTATTAACTATCAGCCTCCAACTGTTGTACCTGGAGGTGACCTGG
CCAAGGTTCAGCGAGCTGTTTGCATGATCAGCAACAACACAGCAGTGGCT
GAAGTGTTCTCTCGCATTGATCACAAATTCGATCTCATGTATGCCAAGAG
GGCATTCGTCCACTGGTACGTTGGTGAAGGCATGGAGGAAGGTGAATTCT
CAGAAGCACGTGAAGATCTGGCTGCTCTTGAGAAAGATTATGAGGAAGTT
GGTGCAGAAGGAGTTGATGATGAGGATGATGGTGAAGAATATTGATGTAC
TGCTTCTGCTGTAAACTATGAAGATGAGAAATATGTACATTTTGCAAGGG
CATTTATGTGGAAATTTGTTGAGAAATGTGAGGGTCTGTACTCAATGCTT
AGTCCCTTGCCTTTTTATTGCTTTGTTTCTTTCGTGTAGACTATTTCCTT
TTGCTGTTGAACTCTCAAAATTGTGCCAATATTGTGATTCGTGGTGCTTT
TAATGGTATCAGTGAAGTGATATTTTAGAATTATAAGTTGCATATTGTTT
CTNANAAAAAAAAAAAAAAAA
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