CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:210..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNSC (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain CC9605) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.907e-49
Identity = 101/197 (51.27%), Postives = 131/197 (66.50%), Query Frame = -1
Query:  240 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 827
            MPIGTP V YR PG    +WVD++  L  ER++F+G  +++  +N ++A MLYLDS D SK +Y+YIN PGG VT  LAIYDT+Q +KS V T CVG A  +  FLLA G KG R A+P SRI +  P  G +R QA DI  EA E+LR+++ + + LS  +GQ FEKI KD  R     ++EA EYGLIDR+I  P
Sbjct:    1 MPIGTPSVPYRLPGSQMERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAGLAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQASDIEIEAREILRMKEMLNRSLSDMSGQSFEKIEKDTDRDYFLSAEEAKEYGLIDRVISHP 197          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMT (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain NATL2A) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.093e-48
Identity = 98/197 (49.75%), Postives = 131/197 (66.50%), Query Frame = -1
Query:  240 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 827
            MPIGTP V YR PG    +WVD++  L  ER++F+GQ +++  +N ++A MLYLDS D SK +Y+YIN PGG VT  LAIYDTM+ +KS + T CVG A  +  FLL+ G KG R A+P SRI +  P  G A+ QA DI  EA E+LR+++ + K ++  TGQ +EKI KD  R     ++EA  YGLIDR+I  P
Sbjct:    1 MPIGTPSVPYRLPGSQFERWVDIYTRLGAERILFLGQEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAGLAIYDTMKYVKSDLVTICVGLAASMGAFLLSAGTKGKRLALPHSRIMIHQPLGGTAQRQASDIEIEAREILRIKEMLNKSMAEMTGQTYEKIEKDTDRDYFLSAEEAKNYGLIDRVITHP 197          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNS9 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain CC9902) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.428e-48
Identity = 100/197 (50.76%), Postives = 130/197 (65.99%), Query Frame = -1
Query:  240 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 827
            MPIGTP V YR PG    +WVD++  L  ER++F+G  +++  +N ++A MLYLDS D SK +Y+YIN PGG VT  LAIYDT+Q +KS V T CVG A  +  FLLA G KG R A+P SRI +  P  G +R QA DI  EA E+LR++D +   L+  +GQ FEKI KD  R     ++EA+ YGLIDR+I  P
Sbjct:    1 MPIGTPSVPYRLPGSQMERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAGLAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQASDIEIEAREILRMKDMLNHSLADMSGQTFEKIEKDTDRDYFLSAEEAMAYGLIDRVISHP 197          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMA (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.428e-48
Identity = 97/197 (49.24%), Postives = 131/197 (66.50%), Query Frame = -1
Query:  240 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 827
            MPIGTP V YR PG    +WVD++  L  ER++F+GQ + +  +N ++A MLYLDS D +K +Y+YIN PGG VT  LAIYDTM+ +KS V T CVG A  +  FLL+ G K  R A+P SRI +  P  G ++ QA DI  EA E+LR++D + + ++  TGQPFEKI KD  R     ++EA +YGLID++I  P
Sbjct:    1 MPIGTPSVPYRLPGSQFERWVDIYTRLGAERILFLGQEVTDGVANSLVAQMLYLDSEDSTKPIYLYINSPGGSVTAGLAIYDTMKYVKSDVVTICVGLAASMGAFLLSAGTKNKRLALPHSRIMIHQPLGGTSQRQASDIEIEAKEILRIKDMLNRSMAEMTGQPFEKIEKDTDRDYFLSAKEAKDYGLIDKVISHP 197          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNPX (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain WH8102) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.435e-48
Identity = 99/197 (50.25%), Postives = 131/197 (66.50%), Query Frame = -1
Query:  240 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 827
            MPIGTP V YR PG    +WVD++  L  ER++F+G  +++  +N ++A MLYLDS D SK +Y+YIN PGG VT  LAIYDT+Q +KS V T CVG A  +  FLLA G KG R A+P SRI +  P  G +R QA DI  EA E+LR+++ + + LS  +GQ F+KI KD  R     ++EA +YGLIDR+I  P
Sbjct:    1 MPIGTPSVPYRLPGSQMERWVDIYTRLGVERILFLGSEVNDGIANSLVAQMLYLDSEDSSKPIYLYINSPGGSVTAGLAIYDTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQASDIEIEAREILRMKEMLNRSLSDMSGQSFDKIEKDTDRDYFLSAEEAKDYGLIDRVISHP 197          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_PROM9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.435e-48
Identity = 99/197 (50.25%), Postives = 131/197 (66.50%), Query Frame = -1
Query:  240 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 827
            MPIGTP V YR PG    +WVD++  L  ER++F+GQ +++  +N ++A MLYLDS D+SK +Y+YIN PGG VT  LAIYDT++ +KS V T CVG A  +  FLLA G KG R A+P SRI +  P  G ++ QA DI  EA E+LR++D +   ++  TGQ FEKI KD  R     ++EA  YGLIDR+I  P
Sbjct:    1 MPIGTPSVPYRLPGSQYERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSDDNSKPIYLYINSPGGSVTAGLAIYDTIKYVKSDVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSQRQASDIEIEAKEILRIKDMLNMSMADMTGQSFEKIEKDTDRDYFLSAEEAKNYGLIDRVITHP 197          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMP (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.254e-48
Identity = 98/197 (49.75%), Postives = 130/197 (65.99%), Query Frame = -1
Query:  240 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 827
            MPIGTP V YR PG    +WVD++  L  ER++F+GQ +++  +N ++A MLYLDS D++K +Y+YIN PGG VT  LAIYDT++ +KS V T CVG A  +  FLL  G KG R A+P SRI +  P  G ++ QA DI  EA E+LR++D +   +S  TGQ FEKI KD  R     ++EA  YGLIDR+I  P
Sbjct:    1 MPIGTPSVPYRLPGSQYERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSDDNTKPIYLYINSPGGSVTAGLAIYDTIKYVKSDVVTICVGLAASMGAFLLGAGTKGKRVALPHSRIMIHQPLGGTSQRQASDIEIEAREILRIKDMLNHSMSDMTGQSFEKIEKDTDRDYFLSAEEAKNYGLIDRVISHP 197          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMM (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.578e-47
Identity = 98/197 (49.75%), Postives = 127/197 (64.47%), Query Frame = -1
Query:  240 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA-RGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 827
            MPIGTP V YR PG    +WVD++  L  ER++F+GQ + +  +N ++A MLYLDS D +K +Y+YIN PGG VT  LAIYDTM+ +KS V T CVG A  +  FLL  G KG R A+P SRI +  P G   + QA DI  EA E+LR++D +   ++  TGQ FEKI KD  R     + EA +YGLIDR+I  P
Sbjct:    1 MPIGTPSVPYRLPGSQMERWVDIYTRLGVERILFLGQEVSDGVANSLVAQMLYLDSEDSTKPIYLYINSPGGSVTAGLAIYDTMKYVKSDVVTICVGLAASMGAFLLTAGTKGKRLALPHSRIMIHQPLGGTNQRQASDIEIEAREILRIKDMLNHSMAELTGQSFEKIEKDTDRDYFLSAAEAKDYGLIDRVIAHP 197          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_OSTTA (ATP-dependent Clp protease proteolytic subunit OS=Ostreococcus tauri GN=clpP PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.834e-47
Identity = 90/192 (46.88%), Postives = 128/192 (66.67%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV YR PGE + QWVDL+N LYRERV+F+G  +D+E +NQ+   MLYL + D S+ +++YIN PGG VT  L+++D M  +++ V T  +GFA  +A F+LAGGE+G+R A+P  R+ +  P G   GQA ++  E +E++R+R  I +     TGQP   I  DL R K   ++EA EYGL+D +
Sbjct:    1 MPIGVPKVAYRLPGESTPQWVDLYNRLYRERVLFLGSGLDDELANQLNGIMLYLSAEDASRSLFLYINSPGGSVTAGLSVFDIMNYVQASVTTIGIGFAASMASFILAGGERGSRIALPHCRVMIHQPQGGMEGQASEVVLEKEEIVRLRRLIGRLYVDLTGQPLSTIANDLDRDKYLSAREAREYGLVDLV 192          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CYAP8 (ATP-dependent Clp protease proteolytic subunit OS=Cyanothece sp. (strain PCC 8801) GN=clpP PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.023e-46
Identity = 95/194 (48.97%), Postives = 128/194 (65.98%), Query Frame = -1
Query:  249 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 827
            MP+G P V YR PG    +W+D++  L +ER+IF+GQ + +  +N+I+A +LYLDS D  K +Y+YIN PGG VT  +AIYDTMQ +KS V T CVG A  +  FLLA G  G R A+P +RI +  P  G  R QA DI+ EA+E+LR+R  + + L+ KTGQ  EKI KD  R     ++EA  YGLID++I
Sbjct:    1 MPLGVPSVPYRLPGSQYERWIDIYTRLSQERIIFLGQEVTDGLANRIVAFLLYLDSEDPGKPIYLYINSPGGSVTAGMAIYDTMQYIKSDVITICVGLAASMGAFLLASGTPGKRLALPHARIMIHQPMGGTGRRQATDIQIEANEILRIRQQLNEILAHKTGQTIEKIQKDTDRDYYMSAEEAQAYGLIDKVI 194          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP3_SYNSC4.907e-4951.27ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_PROMT1.093e-4849.75ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP3_SYNS91.428e-4850.76ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_PROMA1.428e-4849.24ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP3_SYNPX2.435e-4850.25ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_PROM92.435e-4850.25ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_PROMP9.254e-4849.75ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_PROMM1.578e-4749.75ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_OSTTA7.834e-4746.88ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CYAP81.023e-4648.97ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
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