CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNS9 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9902) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.026e-38
Identity = 80/172 (46.51%), Postives = 113/172 (65.70%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L RER+IF+G+ +  + +N+I+A ML+L++ D  K +Y+YIN PGG V   L I+DTMQ +K  V T CVG A  +  FLL  G KG RS++  SRI +  P G A GQA DIR +ADE+L ++D +  ELS +TGQP ++I +D  R       EA+ YGLID +I
Sbjct:   17 DIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMIHQPLGGASGQASDIRIQADEILYLKDRLNTELSDRTGQPLDRIQEDTDRDFFMSPGEAVSYGLIDSVI 188          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_LIRTU (ATP-dependent Clp protease proteolytic subunit OS=Liriodendron tulipifera GN=clpP PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.339e-38
Identity = 78/193 (40.41%), Postives = 122/193 (63.21%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGE    WVD++N LYRER++F+GQ +D E SNQ++  M+YL   DD++ +Y++IN PGG V P ++IYDTMQ +   V T C+G A  +  F+L GGE   R A P +R+ +  PA +       +   EA+ELL++R+ + +   ++TG P   +++D+ R     + EA  +G++D +
Sbjct:    1 MPIGVPKVPFRSPGEEDAIWVDVFNRLYRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYLFINSPGGWVIPGISIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAPTGEFILEAEELLKLRETLTRVYVQRTGNPLWVVSEDMERDVFMSAAEAQAHGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_DRIGR (ATP-dependent Clp protease proteolytic subunit OS=Drimys granadensis GN=clpP PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.339e-38
Identity = 79/191 (41.36%), Postives = 121/191 (63.35%), Query Frame = -1
Query:  258 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLID 827
            MPIG PKV +R+PGE    WVD++N L+RER++F+GQ +D E SNQ++  M+YL   DD++ +Y++IN PGG V P +AIYDTMQ +   V T C+G A  +  F+L GGE   R A P +R+ +  PA +       +   EA+ELL++R+ + +   ++TG P   I++D+ R     + EA  +G++D
Sbjct:    1 MPIGVPKVPFRSPGEEDAVWVDVYNRLHRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQPASSFYEAPTGEFILEAEELLKLRETLTRVYVQRTGNPLWVISEDMERDVFMSATEAQAHGIVD 191          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNSC (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9605) GN=clpP2 PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.285e-38
Identity = 79/172 (45.93%), Postives = 114/172 (66.28%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L RER+IF+G+ +  + +N+I+A ML+L++ D  K +Y+YIN PGG V   L I+DTMQ +K  V T CVG A  +  FLL  G KG RS++  SRI +  P G A+GQA DIR +ADE+L +++ + KELS +TGQ  ++I +D  R       EA+ YGLID +I
Sbjct:   17 DIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMIHQPLGGAQGQASDIRIQADEILFLKERLNKELSDRTGQTLDRIQQDTDRDFFMSPTEAMNYGLIDSVI 188          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_SYNWW (ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.984e-38
Identity = 80/193 (41.45%), Postives = 124/193 (64.25%), Query Frame = -1
Query:  237 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 812
            P V+ +T  GE S+   D+++ L ++R+IF+G  ID+  +N ++A +L+L++ D  K + +YIN PGG +T  +AIYDT+Q ++  V T CVG A  +  FLLA G+KG R A+P + I +  PAG  +GQA DI   A  ++ +++ + K L+ +TGQP E+I KD  R     +QEA EYG+ID +I  P+
Sbjct:    6 PMVVEQTNRGERSY---DIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPGGSITAGMAIYDTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGTQGQATDIEIHARRIMNMKESLNKILAERTGQPLERIQKDTDRDYFMTAQEAKEYGIIDEVISHPK 195          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_AMBTC (ATP-dependent Clp protease proteolytic subunit OS=Amborella trichopoda GN=clpP PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.984e-38
Identity = 80/193 (41.45%), Postives = 121/193 (62.69%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MP+G PKV +R+PGE    WVD++N L+RER++F+GQ ++ E SNQI+  M+YL   DD++ +Y++IN PGG V P +AIYD MQ +   V T C+G A  +  F+LAGGE   R A P +R+ +  PA +     A +   EA ELL++R+ I     ++TG P   +++D+ R     + EA  +G++D I
Sbjct:    1 MPVGVPKVPFRSPGEEDATWVDIYNRLHRERLLFLGQEVEGEISNQIVGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIYDAMQFVPPDVHTICMGLAASMGSFVLAGGEITKRLAFPHARVMIHQPASSFYEAPAGEFILEAGELLKLRETITSVYVQRTGNPLWVVSEDMERDVFMSATEAQAHGIVDLI 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNY3 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.984e-38
Identity = 79/179 (44.13%), Postives = 116/179 (64.80%), Query Frame = -1
Query:  228 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKE 764
            D+++ L RER+IF+G  +D++ ++ I+A +L+LD+ D  K + +YIN PGG V   LAIYDTMQ ++  V T C G A  +  FLL+GG KG R A+P SRI +  P G A+GQA +I  +A E+L ++D +   L   TGQP EK+ +D  R     ++EA EYGLID++I  P + +
Sbjct:   39 DIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAREILYIKDRLNTMLVEHTGQPMEKLQEDTERDFFMSAEEAKEYGLIDQVISRPNLPD 217          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_THELT (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=clpP PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.897e-38
Identity = 80/176 (45.45%), Postives = 113/176 (64.20%), Query Frame = -1
Query:  237 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 764
            D+++ L ++R++F+G  ID+  +N ++A +L+L++ D  K + +YIN PGG VT  LAIYDTMQ +KS V T CVG A  +A  LLA G KG R A+P +RI L  P G A G   D+     ELLR+++ I   LS KTGQP ++I KD  R     + EAL+YGL+D++I   R
Sbjct:   23 DIYSRLLKDRIVFLGYAIDDHVANLVVAQLLFLEAEDPDKDIQLYINSPGGSVTAGLAIYDTMQYIKSDVVTICVGQAASMAAVLLASGTKGKRFALPNARIMLHQPLGGAEGPVKDVEIITKELLRIKNLINTILSEKTGQPLDRIEKDTDRDFFMSAYEALDYGLVDKVIESKR 198          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_NATTJ (ATP-dependent Clp protease proteolytic subunit OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=clpP PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.897e-38
Identity = 82/192 (42.71%), Postives = 125/192 (65.10%), Query Frame = -1
Query:  240 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 812
            P V+ +T  GE S+   D+++ L ++R+IFIG  I+++ +N ++A ML+L+S D  K +++YIN PGG V   LAIYDTMQ ++S V T CVG A  +   LLA G +G R  +P SRI L  P G A+GQA D+   A E+++ ++ + + L+  TGQP E+I+KD  R     S+EA +YG+ID +++ P
Sbjct:    5 PMVIEQTNRGERSY---DIYSRLLKDRIIFIGTGINDDIANSVIAQMLFLESEDPDKDIHLYINSPGGHVHAGLAIYDTMQYIRSDVSTICVGMAASMGAVLLAAGNEGKRFCLPNSRIMLHQPMGGAQGQAADVEIHAREIMKTKERLNQILAHHTGQPVEQISKDTDRDFFMSSEEAQKYGVIDDVLKRP 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_SHEAM (ATP-dependent Clp protease proteolytic subunit OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=clpP PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.090e-38
Identity = 83/189 (43.92%), Postives = 120/189 (63.49%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   ++E  +N I+A +L+L+S +  K +Y+YIN PGG VT  +AIYDTMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+L ++  + + LS  TGQP E I +D  R     + +A+EYGLID ++
Sbjct:   14 PMVVEQTAKGERSY---DIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESENPDKEIYLYINSPGGSVTAGMAIYDTMQFIKPKVSTVCIGQACSMGAFLLAGGEKGMRHCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNQMLSHHTGQPMEVIERDTDRDNFMSATQAVEYGLIDSVL 199          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP1_SYNS91.026e-3846.51ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_LIRTU1.339e-3840.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DRIGR1.339e-3841.36ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNSC2.285e-3845.93ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_SYNWW2.984e-3841.45ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AMBTC2.984e-3841.45ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNY32.984e-3844.13ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_THELT3.897e-3845.45ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NATTJ3.897e-3842.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEAM5.090e-3843.92ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
back to top