CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMM (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.682e-38
Identity = 78/172 (45.35%), Postives = 113/172 (65.70%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L RER+IF+G+ +  + +N+I+A ML+L++ D  K +Y+YIN PGG V   L I+DTMQ +K  V T CVG A  +  FLL  G  G RS++  SRI +  P G ARGQA DIR +ADE+L ++D + + L+ +TGQP E+I +D  R       EA+ YGL+D +I
Sbjct:   17 DIYSRLLRERIIFLGEPVTSDSANRIVAQMLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLCAGAMGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKDRLNRVLADRTGQPLERIQEDTDRDFFMSPAEAVGYGLVDSVI 188          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMA (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus GN=clpP3 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.682e-38
Identity = 76/172 (44.19%), Postives = 115/172 (66.86%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L RER+IF+G +++++ ++ ++A ML+L++ D  K + +YIN PGG VT  LAIYDTMQ +   + T C G A  +  FLLAGG KG R A+P SRI +  P G A+GQA +I  +A E+L +++ +   L+  TGQ  EKI++D  R      QEA+EYGLID+++
Sbjct:   41 DIYSRLLRERIIFLGTDVNDQIADALVAQMLFLEAEDPEKDIQLYINSPGGSVTAGLAIYDTMQQVNPDIVTMCYGLAASMGAFLLAGGSKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKETLNNLLAEHTGQSLEKISEDTDRDHFLSPQEAVEYGLIDKVV 212          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_THET8 (ATP-dependent Clp protease proteolytic subunit OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpP PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.134e-37
Identity = 73/172 (42.44%), Postives = 117/172 (68.02%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L ++R+IF+G  ID + +N ++A +L+LD+ + ++ + +YIN PGG+V   LAIYDTMQ +++PV T  +G A  +A  +LA GEKG R A+P +++ +  P G  RG A DI  +A E+L+ +  + + L++ TGQP EK+ KD  R     +QEALEYGLID+++
Sbjct:   18 DIYSRLLKDRIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKLYINSPGGEVDAGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGVRGTASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALEYGLIDQVV 189          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_THET2 (ATP-dependent Clp protease proteolytic subunit OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpP PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 1.134e-37
Identity = 73/172 (42.44%), Postives = 117/172 (68.02%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L ++R+IF+G  ID + +N ++A +L+LD+ + ++ + +YIN PGG+V   LAIYDTMQ +++PV T  +G A  +A  +LA GEKG R A+P +++ +  P G  RG A DI  +A E+L+ +  + + L++ TGQP EK+ KD  R     +QEALEYGLID+++
Sbjct:   18 DIYSRLLKDRIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKLYINSPGGEVDAGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGVRGTASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALEYGLIDQVV 189          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_SYNAS (ATP-dependent Clp protease proteolytic subunit OS=Syntrophus aciditrophicus (strain SB) GN=clpP PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.481e-37
Identity = 78/172 (45.35%), Postives = 114/172 (66.28%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L ++R+IF+G  ID+E +N I+A +L+L+S D  K ++ Y+N PGG ++  +AIYDTM+ +K PV T CVG A  +   LLA GE+G RSA+P SRI +  P G  +GQA DI  +A E+LR++D +   L+  T QP ++I  D  R     SQ+A EYG+ID II
Sbjct:   19 DIYSRLLKDRIIFLGTPIDDEVANLIIAQLLFLESEDPDKEIFFYLNTPGGHISSGMAIYDTMRYIKPPVATVCVGQAASMGALLLAAGEQGKRSALPHSRILIHQPLGGFQGQATDIDIQAREILRLKDELSLILADLTNQPLDRIKTDTERDYYMTSQQAKEYGIIDEII 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_PIPCE (ATP-dependent Clp protease proteolytic subunit OS=Piper cenocladum GN=clpP PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.481e-37
Identity = 78/193 (40.41%), Postives = 120/193 (62.18%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGE    WVD++N L+RER++F+GQ +D E SNQI+  M+YL   D ++ +Y++IN PGG V P +AIYDTMQ +   V T C+G A  +  F+L GGE   R A P + + +  PA +       +   EA+ELL++R+ + +   ++TG P   +++DL R     + EA  +G++D +
Sbjct:    1 MPIGVPKVPFRSPGEEDAAWVDVYNRLHRERLLFLGQEVDSEISNQIVGLMVYLSIEDGTRDLYLFINSPGGWVIPGIAIYDTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHAWVMIHQPASSFYEAPTGEFILEAEELLKLRETLTRVYVQRTGNPLWVVSEDLERDVFMSATEAQAHGIVDLV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_EUBR3 (ATP-dependent Clp protease proteolytic subunit OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=clpP PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.481e-37
Identity = 74/172 (43.02%), Postives = 116/172 (67.44%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L ++R+IF+G+ ++E  ++ ++A +L+L+S D +K +++YIN PGG VT  LAIYDTMQ +K  V T C+G A  +  FLLAGG KG R A+P + I +  P+G A+GQA +I+  A+ +L+ +  + + L+  TG+P+E I  D  R     +QEA EYGLID +I
Sbjct:   19 DIYSRLLKDRIIFLGEEVNETTASLVVAQLLFLESEDPNKDIHLYINSPGGMVTAGLAIYDTMQYIKCDVSTICIGLAASMGAFLLAGGAKGKRYALPNAEIMIHQPSGGAKGQATEIQIAAENILKTKKRLNEILAANTGKPYETIAADTERDNYMSAQEAAEYGLIDSVI 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_DESOH (ATP-dependent Clp protease proteolytic subunit OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=clpP PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.481e-37
Identity = 82/194 (42.27%), Postives = 125/194 (64.43%), Query Frame = -1
Query:  249 MPIGTPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 827
            MP+  P V+ +T  GE ++   D+++ L ++R++FIG  ID+E +N ++A +L+L+S D  K +  YIN PGG V+  +AIYDTMQ +KS + T C+G A  +  FLLA G KG R ++P SRI +  P G A+GQA DI  +A E+LR++D + + L+  TG+P E+I  D  R      +EA  YG++D +I
Sbjct:    1 MPL-IPMVIEQTSRGERAF---DIYSRLLKDRIVFIGSAIDDETANLLIAQLLFLESEDPDKDINFYINSPGGKVSAGMAIYDTMQYIKSDIATVCIGHAASMGAFLLAAGAKGKRFSLPNSRIMIHQPMGGAQGQASDIAIQAKEILRMKDILNQILAHHTGKPLEQIQVDTDRDFFMSGEEAKAYGIVDHVI 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_BACA2 (ATP-dependent Clp protease proteolytic subunit OS=Bacillus amyloliquefaciens (strain FZB42) GN=clpP PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.481e-37
Identity = 75/172 (43.60%), Postives = 112/172 (65.12%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L ++R+I +G  ID+  +N I++ +L+L++ D  K + +YIN PGG +T  +AIYDTMQ +K  V T C+G A  +  FLLA GEKG R A+P S + +  P G A+GQA +I   A  +L +RD + K L+ +TGQP E I +D  R     + EALEYGLID+++
Sbjct:   19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSADEALEYGLIDKVL 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP1_MYXXD (ATP-dependent Clp protease proteolytic subunit 1 OS=Myxococcus xanthus (strain DK 1622) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.481e-37
Identity = 85/199 (42.71%), Postives = 124/199 (62.31%), Query Frame = -1
Query:  234 MPIGTPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 827
            MP+  P V+ +T  GE S+   D+++ L ++R++ +G  ID++ +N I+A +L+L+S D  K + +YIN PGG VT  LAIYDTMQ +K PV T CVG A  +   LL  G KG R A+P SRI +  P G  RGQA DI  +A E+LR++  + + + + TGQ  E++ KD  R    G+ EA  YG+ID I  P ++
Sbjct:    4 MPV--PYVIEQTHRGERSY---DIYSRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRGQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDEIQNPRKV 197          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP3_PROMM8.682e-3845.35ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP3_PROMA8.682e-3844.19ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP_THET81.134e-3742.44ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THET21.134e-3742.44ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SYNAS1.481e-3745.35ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PIPCE1.481e-3740.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EUBR31.481e-3743.02ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESOH1.481e-3742.27ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BACA21.481e-3743.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_MYXXD1.481e-3742.71ATP-dependent Clp protease proteolytic subunit 1 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
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