CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_SORBI (ATP-dependent Clp protease proteolytic subunit OS=Sorghum bicolor GN=clpP PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.934e-37
Identity = 80/191 (41.88%), Postives = 117/191 (61.26%), Query Frame = -1
Query:  258 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLID 827
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D +  ++++IN PGG +   +AI+DTMQ++   + T C+G A  +A F+L GGE   R A P +RI L  PA A  R +  +   E +EL +VR+ I +  + +TG+PF  +++D+ R     + EA  YGL+D
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVD 191          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_SACOF (ATP-dependent Clp protease proteolytic subunit OS=Saccharum officinarum GN=clpP PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.934e-37
Identity = 80/191 (41.88%), Postives = 117/191 (61.26%), Query Frame = -1
Query:  258 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLID 827
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D +  ++++IN PGG +   +AI+DTMQ++   + T C+G A  +A F+L GGE   R A P +RI L  PA A  R +  +   E +EL +VR+ I +  + +TG+PF  +++D+ R     + EA  YGL+D
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVD 191          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_SACHY (ATP-dependent Clp protease proteolytic subunit OS=Saccharum hybrid GN=clpP PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.934e-37
Identity = 80/191 (41.88%), Postives = 117/191 (61.26%), Query Frame = -1
Query:  258 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLID 827
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D +  ++++IN PGG +   +AI+DTMQ++   + T C+G A  +A F+L GGE   R A P +RI L  PA A  R +  +   E +EL +VR+ I +  + +TG+PF  +++D+ R     + EA  YGL+D
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVD 191          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_DIOEL (ATP-dependent Clp protease proteolytic subunit OS=Dioscorea elephantipes GN=clpP PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.934e-37
Identity = 80/193 (41.45%), Postives = 121/193 (62.69%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R+PGE    WVD+ N L+RER++F+GQ +D E SNQ++  M+YL   D +K +Y++IN PGG V P +AIYDTMQ +   V T C+G A  +   +L GGE   R A P +R+ +  PA +    QA +   EA+ELL++R+ + K   ++TG P   +++D+ R     + EA  +G++D +
Sbjct:    1 MPIGVPKVPFRSPGEEDAVWVDV-NRLHRERLLFLGQEVDNEVSNQLVGLMVYLSIEDATKDLYLFINSPGGWVIPGMAIYDTMQFVSPDVHTICMGLAASMGSLILVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFILEAEELLKLRETLTKVYVQRTGNPLWAVSEDMERDAFMSATEAQAHGIVDLV 192          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_DESDG (ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio desulfuricans (strain G20) GN=clpP PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.934e-37
Identity = 78/172 (45.35%), Postives = 114/172 (66.28%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L ++R+I +G  +D+  ++ I A +L+L+S +  K +Y+YIN PGG VT  LAIYDTMQ + +PV T C+G A  +  FLLA G+ G R A+P SRI +  P G A+GQA DI  +A E+LR++D + + LSR TGQP EKI +   R    G + A  +G+IDRI+
Sbjct:   18 DIYSRLLKDRIILLGTPVDDNVASLICAQLLFLESENPEKEIYLYINSPGGVVTAGLAIYDTMQYISAPVATLCMGQAASMGAFLLAAGQPGMRFALPNSRIMIHQPMGGAQGQATDIDIQAREILRLKDRLNEILSRHTGQPLEKIVEHTDRDYFMGPENAKNFGIIDRIL 189          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_DESAH (ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=clpP PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.934e-37
Identity = 75/172 (43.60%), Postives = 115/172 (66.86%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L ++R+IF+G  +D+E +N I+A +L+L+S D  K +  YIN PGG VT  +A+YDTMQ +K  V T C+G A  +   LLA G KG R ++P SRI +  P G A+GQA DI+ +A+E+LR+++ +   LS+ TGQ F+KI++D  R       +A EYGL+D ++
Sbjct:   19 DIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDINFYINSPGGVVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIKIQANEILRMKEVLSGILSKHTGQNFDKISEDTDRDFFMSGDQAKEYGLVDHVV 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP4_PROM9 (ATP-dependent Clp protease proteolytic subunit 4 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP4 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.934e-37
Identity = 81/192 (42.19%), Postives = 119/192 (61.98%), Query Frame = -1
Query:  246 IGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 821
            IG    +    G G   + D+++ L RER+IF+G  I+++ S+ ++A +L+L++ D  K + +YIN PGG VT  +AIYDTMQ +   V T C G A  +  FLL+GG KG R A+P SRI +  P G A+GQA +I  +A E+L ++  +   L+  TGQP EKI +D  R       EA+EYGLID++I+
Sbjct:   28 IGAVPTVIEQSGRGERAF-DIYSRLLRERIIFLGSGINDQVSDSLVAQLLFLEAEDPEKDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEYGLIDKVIK 218          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMA (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus GN=clpP1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.934e-37
Identity = 74/172 (43.02%), Postives = 111/172 (64.53%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L RER++F+G+ +  + +N+I+A +L+L++ D  K +++YIN PGG V     I+DT+Q +K  V T CVG A  +  FLL  G KG RS++  SRI +  P G ARGQA DIR +ADE+L ++  +  ELS +TGQP  KI +D  R       EA+ YG+ID ++
Sbjct:   17 DIYSRLLRERIVFLGEQVTNDSANRIVAQLLFLEAEDPEKDIFLYINSPGGSVYDGFGIFDTIQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQATDIRIQADEILFLKQKLNTELSNRTGQPLSKIAEDTDRDFYMSPSEAISYGIIDNVL 188          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_MOOTA (ATP-dependent Clp protease proteolytic subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=clpP PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.526e-37
Identity = 83/206 (40.29%), Postives = 127/206 (61.65%), Query Frame = -1
Query:  213 MPIGTPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKEDMPRK 827
            M +  P V+ +T  GE ++   D+++ L ++R+IF+G  ID+  +N ++A ML+L++ D  K +++YIN PGG ++  +AI+DTMQ ++  V T CVG A  +  FLLA G KG R A+P S I +  P G  +GQA DI   A  +L +RD + + LS  TG+P E+I +D  R     ++EA EYGLID +I     K ++P K
Sbjct:    1 MSVLVPMVVEQTSRGERAY---DIYSRLLKDRIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHLYINSPGGSISAGMAIFDTMQYIRPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIMIHQPMGGTQGQAVDIEIHAKRILAIRDNLNRILSEITGKPLEQIARDTDRDHFMTAREAREYGLIDEVI----TKRELPAK 199          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_HORVU (ATP-dependent Clp protease proteolytic subunit OS=Hordeum vulgare GN=clpP PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.526e-37
Identity = 80/191 (41.88%), Postives = 116/191 (60.73%), Query Frame = -1
Query:  258 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLID 827
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D    ++++IN PGG +   +AI+DTMQ++   + T C+G A  +A F+L GGE   R A P +RI L  PA A  R +  +   E +EL +VR+ I +  + +TG+PF  +++D+ R     + EA  YGL+D
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPAKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVD 191          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_SORBI1.934e-3741.88ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SACOF1.934e-3741.88ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SACHY1.934e-3741.88ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DIOEL1.934e-3741.45ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESDG1.934e-3745.35ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESAH1.934e-3743.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP4_PROM91.934e-3742.19ATP-dependent Clp protease proteolytic subunit 4 O... [more]
CLPP1_PROMA1.934e-3743.02ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_MOOTA2.526e-3740.29ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HORVU2.526e-3741.88ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
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