CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_STAA3 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain USA300) GN=clpP PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.309e-37
Identity = 74/174 (42.53%), Postives = 111/174 (63.79%), Query Frame = -1
Query:  243 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 764
            D+++ L ++R+I +G  ID+  +N I++ +L+L + D  K +Y+YIN PGG VT   AIYDT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_STAA2 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain JH1) GN=clpP PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.309e-37
Identity = 74/174 (42.53%), Postives = 111/174 (63.79%), Query Frame = -1
Query:  243 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 764
            D+++ L ++R+I +G  ID+  +N I++ +L+L + D  K +Y+YIN PGG VT   AIYDT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_STAA1 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=clpP PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.309e-37
Identity = 74/174 (42.53%), Postives = 111/174 (63.79%), Query Frame = -1
Query:  243 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 764
            D+++ L ++R+I +G  ID+  +N I++ +L+L + D  K +Y+YIN PGG VT   AIYDT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_PINKO (ATP-dependent Clp protease proteolytic subunit OS=Pinus koraiensis GN=clpP PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.309e-37
Identity = 77/193 (39.90%), Postives = 117/193 (60.62%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MP+G PKV +R PG+    WVDL+N LYRER++F+ Q+I+ E +NQ++  M+YL + D +K ++ +IN PGG V P + ++D MQ +   V T C+G A  +  F+L GGE   R A+P +R+ +  PA +   G A +  NEA  +  +R+YI K    +T  P E I +DL R     + EA  YG++D +
Sbjct:    1 MPVGVPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDIFSFINCPGGSVIPGVGLFDMMQVIVPNVHTICMGVAASMGSFILIGGEITKRMALPHARVMIHQPASSYYDGPAAEFHNEAKHITMLRNYITKCYIERTDNPEEVIQRDLDRDVFMSATEARAYGIVDTV 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_PELCD (ATP-dependent Clp protease proteolytic subunit OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=clpP PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.309e-37
Identity = 82/189 (43.39%), Postives = 122/189 (64.55%), Query Frame = -1
Query:  246 PKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 812
            P V+ +T G G   + D+++ L ++R+IF+G  +D++ +N I+A ML+L+S D  K +++YIN PGG VT  +AIYDTMQ ++ PV T CVG A  +   LLA G +G R A+P +RI +  P G  +GQA DI   A E+LR+R+ +   L+  TGQ  EKI  D  R    GS+EA +YG++D I++
Sbjct:    5 PMVVEQT-GRGERAY-DIFSRLLKDRIIFLGGAVDDQVANLIIAQMLFLESEDPEKEIFLYINSPGGVVTAGMAIYDTMQYVRCPVSTLCVGQAASMGAVLLAAGGEGKRFALPHARIMIHQPWGGFQGQATDINIHAQEILRLRETLNGVLASHTGQTLEKIATDTERDFFMGSEEAKKYGIVDDIVK 191          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ALKMQ (ATP-dependent Clp protease proteolytic subunit OS=Alkaliphilus metalliredigens (strain QYMF) GN=clpP PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.309e-37
Identity = 79/189 (41.80%), Postives = 122/189 (64.55%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ER+IF+G  I++  ++ ++A +L+L++ D  K + +YIN PGG +T  +AIYDTM  +K  V T CVG A  +  FLLA G KG R A+P + + +  P G  RGQA+DIR  A+ ++++RD + K L  +TGQP E++ KD  R     ++EA EYG+ID +I
Sbjct:    5 PVVVEQTSRGERSY---DIFSRLLKERIIFLGDEINDVTASLLVAQLLFLEAEDPDKDIQIYINSPGGSITAGMAIYDTMNYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGTRGQAEDIRIHAERIVKLRDTLNKILVERTGQPLERVQKDTDRDFFMEAKEAKEYGIIDEVI 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ACTSZ (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=clpP PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.309e-37
Identity = 80/189 (42.33%), Postives = 121/189 (64.02%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A +L+L+S D  K + +YIN PGG VT  +AIYDTMQ +K  V T C+G A  +  FLLAGG  G R+A+P +R+ +  P G  RGQA DI+  A E+L+++  + + L+  +GQP E+I KD  R     ++EA  YGLID ++
Sbjct:    5 PMVIEQTSRGERSY---DIYSRLLKERVIFLSGEVEDNMANLIVAQLLFLESEDPDKDINLYINSPGGSVTAGMAIYDTMQFIKPDVRTLCIGQACSMGAFLLAGGAAGKRAALPNARVMIHQPLGGFRGQASDIQIHAQEILKIKHTLNERLAFHSGQPLEQIEKDTDRDNFMSAEEAQNYGLIDSVL 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMM (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.309e-37
Identity = 84/205 (40.98%), Postives = 124/205 (60.49%), Query Frame = -1
Query:  249 PIRGRI-AMMPIGTPKVL---YRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 851
            PI  R   + P+ +P +L       G G   + D+++ L RER+IF+G  +D++ ++ ++A ML+L++ D  K + +YIN PGG VT  LAIYDTMQ +   V T C G A  +  FLL GG KG R A+P +RI +  P G A+GQA DI  +A E+L +++ +   L+  TGQP  KI +D  R       +A+EYGLIDR++
Sbjct:    9 PIHNRWQGIRPVSSPGILPTVVEQSGRGERAF-DIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKDIQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLSPAKAVEYGLIDRVV 212          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_WHEAT (ATP-dependent Clp protease proteolytic subunit OS=Triticum aestivum GN=clpP PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 5.627e-37
Identity = 80/191 (41.88%), Postives = 116/191 (60.73%), Query Frame = -1
Query:  258 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLID 827
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D    ++++IN PGG +   +AI+DTMQ++   + T C+G A  +A F+L GGE   R A P +RI L  PA A  R +  +   E +EL +VR+ I +  + +TG+PF  +++D+ R     + EA  YGL+D
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYAVRTGKPFWVVSEDMERDVFMSADEAKAYGLVD 191          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_RUBXD (ATP-dependent Clp protease proteolytic subunit OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=clpP PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.627e-37
Identity = 83/191 (43.46%), Postives = 125/191 (65.45%), Query Frame = -1
Query:  246 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA-GAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 812
            P V+ ++P GE +   +D+++ L ++R+IF+G  +D++ +N I+A +L+L+S D  + + +YIN PGG V+  LAIYDTMQ +K  + T  +G A  +  FLLA G KG R A+P +RI L  PA G   GQA D+   A EL+R +  + + LS  TGQP++KI +D  R    G++EA+EYGLID I+R
Sbjct:   11 PYVIEQSPRGERA---MDIYSRLLKDRIIFLGTPVDDQVANAIMAQLLHLESEDPEQDINLYINSPGGSVSAGLAIYDTMQFVKPDIVTTALGMAASMGAFLLAAGTKGKRFALPNTRILLHQPAVGGLAGQASDVEIHARELIRTKRRLNEILSEHTGQPYDKIERDTDRDFIMGAEEAIEYGLIDDIVR 198          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_STAA34.309e-3742.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA24.309e-3742.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA14.309e-3742.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PINKO4.309e-3739.90ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PELCD4.309e-3743.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ALKMQ4.309e-3741.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTSZ4.309e-3742.33ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_PROMM4.309e-3740.98ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_WHEAT5.627e-3741.88ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RUBXD5.627e-3743.46ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
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