CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_DEHSB (ATP-dependent Clp protease proteolytic subunit OS=Dehalococcoides sp. (strain BAV1) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.614e-34
Identity = 74/178 (41.57%), Postives = 111/178 (62.36%), Query Frame = -1
Query:  231 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 764
            D+++ L +ER+IF+G  I+++ +N ++A +L+LD  D  K + +YI+ PGG ++  LA+YDTMQ ++  V T CVG A  +A  LL  G KG R A+P + I +    G A+GQA DI   A E++R +D +   L + TGQ  EKI  D  R     +Q+A+EYGLID I++ P  K
Sbjct:   23 DIYSLLLKERIIFLGSQINDQVANLVIAQLLFLDREDPDKDISLYIHSPGGVISAGLAMYDTMQLIRPKVSTICVGVAASMATVLLCAGAKGKRYALPNATIHMHQAMGGAQGQASDIEIAAREIMRQQDILRNILVKHTGQTMEKIVHDSDRDYYLSAQQAVEYGLIDEILQKPENK 200          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBA (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.614e-34
Identity = 76/189 (40.21%), Postives = 118/189 (62.43%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ER+I +   ++++ SN I++ +L+L+S D  K + +YIN PGG +T  +AIYDTMQ +K  V T CVG A  +  FLL+ G KG R A+P + I +  P G  +GQA DI+  A+ +L++++ + K LS  T QP E I  D+ R     + EA  YGL+D++I
Sbjct:    5 PMVVEQTSRGERSY---DIFSRLLKERIIMLSGEVNDDSSNLIVSQLLFLESEDPDKDISIYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMGAFLLSSGAKGKRYALPNAEIMIHQPLGGFQGQATDIQIHANRILKIKESLNKILSENTNQPLEVIEADVERDNFMTADEAKAYGLVDKVI 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_DESHY (ATP-dependent Clp protease proteolytic subunit 2 OS=Desulfitobacterium hafniense (strain Y51) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.614e-34
Identity = 76/195 (38.97%), Postives = 121/195 (62.05%), Query Frame = -1
Query:  240 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP---AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 812
            P V+ +T  GE S+   D+++ L ++R+IF+G  + ++ +N ++A ML+L++ D  K +++YIN PGG ++  +AIYDTMQ +++ V T CVG A  +  FLL  G KG R A+P + I +  P    G   GQA +I   A  LLRV++ + + L+ +TGQ  E+I  D  R +   ++EA EYGLID ++  P
Sbjct:    6 PMVIEQTNRGERSY---DIYSRLLKDRIIFLGGPVTDDVANLVVAQMLFLEAEDPEKDIFLYINSPGGSISAGMAIYDTMQYIRADVHTICVGLAASMGAFLLTAGAKGKRQALPNAEILIHQPLIGGGGISGQATEIEIHAKHLLRVKERMNRILAERTGQTIERIEADTDRDRYMTAEEAKEYGLIDEVLEKP 197          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_VIBFM (ATP-dependent Clp protease proteolytic subunit OS=Vibrio fischeri (strain MJ11) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 75/196 (38.27%), Postives = 121/196 (61.73%), Query Frame = -1
Query:  249 AMMPIGTPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 833
            ++M    P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N ++A +L+L+S +  K +++YIN PGG VT  ++IYDTMQ +K  V T C+G A  +  FLLAGG  G R  +P SR+ +  P G  +GQA DI+  A E+L ++  +   L+  TGQP E I +D  R     + +A++YGL+D ++
Sbjct:   11 SIMDALVPMVVEQTSRGERSY---DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKKKLNTLLAEHTGQPLEVIEQDTDRDNFMSADDAVKYGLVDAVL 203          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_VIBF1 (ATP-dependent Clp protease proteolytic subunit OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 75/196 (38.27%), Postives = 121/196 (61.73%), Query Frame = -1
Query:  249 AMMPIGTPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 833
            ++M    P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N ++A +L+L+S +  K +++YIN PGG VT  ++IYDTMQ +K  V T C+G A  +  FLLAGG  G R  +P SR+ +  P G  +GQA DI+  A E+L ++  +   L+  TGQP E I +D  R     + +A++YGL+D ++
Sbjct:   11 SIMDALVPMVVEQTSRGERSY---DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKKKLNTLLAEHTGQPLEVIEQDTDRDNFMSADDAVKYGLVDAVL 203          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_VEREI (ATP-dependent Clp protease proteolytic subunit OS=Verminephrobacter eiseniae (strain EF01-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 73/180 (40.56%), Postives = 114/180 (63.33%), Query Frame = -1
Query:  249 GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 788
            GE S+   D+++ L +ERVIF+   ++++ +N ++A +L+L+S +  K +  YIN PGG V+  +AI+DTM  +K  V T C G A  +  FLLA G KG R A+P S++ +  P G  +GQA +I   A E+L+ R+ + K L+ +TGQP EKI +D  R     + E+ EYGL+D++I
Sbjct:   22 GERSY---DIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVSAGMAIFDTMNFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFALPNSKVMIHQPLGGMQGQATEIEIHAREILKTREQLNKILAERTGQPLEKIQRDTERDYFLSADESREYGLVDQVI 198          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_PROMH (ATP-dependent Clp protease proteolytic subunit OS=Proteus mirabilis (strain HI4320) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 73/188 (38.83%), Postives = 122/188 (64.89%), Query Frame = -1
Query:  252 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 812
            P V+ +T  GE S+   D+++ L +ER+IF+   +++  +N I+A ML+L++ +  K + +YIN PGG +T  ++IYDTMQ +K+ V T C+G A  +  FLL+ G KG R  +P SR+ +  P G  +GQA DI+  A E+L+V+  + + +++ TG+  E+I +D  R +   + EALEYGL+D++
Sbjct:   18 PMVIEQTSRGERSY---DIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDINLYINSPGGVITAGMSIYDTMQYIKADVSTICMGQACSMGAFLLSAGAKGKRICLPNSRVMIHQPLGGYQGQATDIQIHAQEILKVKSRMNELMAQHTGKSIEEIERDTERDRFLSANEALEYGLVDKV 202          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_LEPIN (ATP-dependent Clp protease proteolytic subunit OS=Leptospira interrogans GN=clpP PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 78/193 (40.41%), Postives = 123/193 (63.73%), Query Frame = -1
Query:  237 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 812
            P V+ +T  GE S+   D+++ L ++R+IF+G  I+++++N I A +L+L++ +  + +Y+Y+N PGG V+  LAIYDTMQ +K  V T C+G A  +A  LLAGG  G RSA+P +RI +  P G A GQA DI  +A E+L++++ +     + TG+  E+I KD  R     + EA  YG+ID +I+  R
Sbjct:    5 PYVIEQTSRGERSY---DIFSRLLKDRIIFLGNAINDDYANVITAQLLFLEAENPERDIYLYLNSPGGYVSSGLAIYDTMQYIKPDVRTLCLGQASSMAALLLAGGAAGKRSALPNARIMMHQPMGGATGQASDIEIQAREVLKLKEILNSIYHKHTGKTVEQIQKDTERNFYMTADEAKNYGIIDTVIQIDR 194          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBL (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 72/180 (40.00%), Postives = 114/180 (63.33%), Query Frame = -1
Query:  249 GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 788
            GE S+   D+++ L ++R+I + + +++  ++ I+A +L+L++ D  K +++YIN PGG +T  +AIYDTMQ +K  V T CVG A  +  FLLA G KG R A+P S + +  P G  RGQA DI   A+ +L+++  +   LS +TG+P E++  D  R     ++EA EYGLID +I
Sbjct:   14 GERSY---DIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLGGFRGQATDIGIHAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEAKEYGLIDEVI 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBK (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Okra / Type B1) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 72/180 (40.00%), Postives = 114/180 (63.33%), Query Frame = -1
Query:  249 GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 788
            GE S+   D+++ L ++R+I + + +++  ++ I+A +L+L++ D  K +++YIN PGG +T  +AIYDTMQ +K  V T CVG A  +  FLLA G KG R A+P S + +  P G  RGQA DI   A+ +L+++  +   LS +TG+P E++  D  R     ++EA EYGLID +I
Sbjct:   14 GERSY---DIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLGGFRGQATDIGIHAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEAKEYGLIDEVI 190          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_DEHSB2.614e-3441.57ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOBA2.614e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_DESHY2.614e-3438.97ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_VIBFM3.414e-3438.27ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_VIBF13.414e-3438.27ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_VEREI3.414e-3440.56ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PROMH3.414e-3438.83ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEPIN3.414e-3440.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOBL3.414e-3440.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOBK3.414e-3440.00ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
back to top