CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBJ (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Kyoto / Type A2) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 72/180 (40.00%), Postives = 114/180 (63.33%), Query Frame = -1
Query:  249 GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 788
            GE S+   D+++ L ++R+I + + +++  ++ I+A +L+L++ D  K +++YIN PGG +T  +AIYDTMQ +K  V T CVG A  +  FLLA G KG R A+P S + +  P G  RGQA DI   A+ +L+++  +   LS +TG+P E++  D  R     ++EA EYGLID +I
Sbjct:   14 GERSY---DIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLGGFRGQATDIGIHAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEAKEYGLIDEVI 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBH (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 72/180 (40.00%), Postives = 114/180 (63.33%), Query Frame = -1
Query:  249 GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 788
            GE S+   D+++ L ++R+I + + +++  ++ I+A +L+L++ D  K +++YIN PGG +T  +AIYDTMQ +K  V T CVG A  +  FLLA G KG R A+P S + +  P G  RGQA DI   A+ +L+++  +   LS +TG+P E++  D  R     ++EA EYGLID +I
Sbjct:   14 GERSY---DIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLGGFRGQATDIGIHAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEAKEYGLIDEVI 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CLOB1 (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 72/180 (40.00%), Postives = 114/180 (63.33%), Query Frame = -1
Query:  249 GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 788
            GE S+   D+++ L ++R+I + + +++  ++ I+A +L+L++ D  K +++YIN PGG +T  +AIYDTMQ +K  V T CVG A  +  FLLA G KG R A+P S + +  P G  RGQA DI   A+ +L+++  +   LS +TG+P E++  D  R     ++EA EYGLID +I
Sbjct:   14 GERSY---DIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLGGFRGQATDIGIHAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEAKEYGLIDEVI 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP1_SALRD (ATP-dependent Clp protease proteolytic subunit 1 OS=Salinibacter ruber (strain DSM 13855) GN=clpP1 PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 73/189 (38.62%), Postives = 121/189 (64.02%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            PKV+ +T  GE ++   D+++ L +ER++FIG  I+++ +N  +A +LYL+S   S+ + +YIN PGG +   L +YDTMQ +++P+ T CVG A  +   LLAGGE G R+ +P SR+ +  P G   GQA DI  +A E+  ++  +++ LS  TG+  ++I +D  R     ++EA EYGL+D+++
Sbjct:   23 PKVVEQTTRGERAY---DIFSRLLKERIVFIGTPINDQIANLTVAQLLYLESEGSSQPINIYINSPGGVIYSGLGVYDTMQYVEAPISTTCVGLAASMGSVLLAGGEDGQRACLPNSRVMMHQPMGGTEGQASDIEIQAKEMAWLKKRLYQILSFHTGKDIDQIEEDADRNHWLSAEEAQEYGLVDQVM 208          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP1_LEPIC (ATP-dependent Clp protease proteolytic subunit 1 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=clpP1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 78/193 (40.41%), Postives = 123/193 (63.73%), Query Frame = -1
Query:  237 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 812
            P V+ +T  GE S+   D+++ L ++R+IF+G  I+++++N I A +L+L++ +  + +Y+Y+N PGG V+  LAIYDTMQ +K  V T C+G A  +A  LLAGG  G RSA+P +RI +  P G A GQA DI  +A E+L++++ +     + TG+  E+I KD  R     + EA  YG+ID +I+  R
Sbjct:    5 PYVIEQTSRGERSY---DIFSRLLKDRIIFLGNAINDDYANVITAQLLFLEAENPERDIYLYLNSPGGYVSSGLAIYDTMQYIKPDVRTLCLGQASSMAALLLAGGAAGKRSALPNARIMMHQPMGGATGQASDIEIQAREVLKLKEILNSIYHKHTGKTVEQIQKDTERNFYMTADEAKNYGIIDTVIQIDR 194          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_SHISS (ATP-dependent Clp protease proteolytic subunit OS=Shigella sonnei (strain Ss046) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 76/189 (40.21%), Postives = 119/189 (62.96%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L+V+  + + ++  TGQ  E+I +D  R +   + EA+EYGL+D I+
Sbjct:   18 PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_SHIFL (ATP-dependent Clp protease proteolytic subunit OS=Shigella flexneri GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 76/189 (40.21%), Postives = 119/189 (62.96%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L+V+  + + ++  TGQ  E+I +D  R +   + EA+EYGL+D I+
Sbjct:   18 PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_SHIF8 (ATP-dependent Clp protease proteolytic subunit OS=Shigella flexneri serotype 5b (strain 8401) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 76/189 (40.21%), Postives = 119/189 (62.96%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L+V+  + + ++  TGQ  E+I +D  R +   + EA+EYGL+D I+
Sbjct:   18 PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_SHIDS (ATP-dependent Clp protease proteolytic subunit OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 76/189 (40.21%), Postives = 119/189 (62.96%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L+V+  + + ++  TGQ  E+I +D  R +   + EA+EYGL+D I+
Sbjct:   18 PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_SHIBS (ATP-dependent Clp protease proteolytic subunit OS=Shigella boydii serotype 4 (strain Sb227) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 76/189 (40.21%), Postives = 119/189 (62.96%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L+V+  + + ++  TGQ  E+I +D  R +   + EA+EYGL+D I+
Sbjct:   18 PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_CLOBJ3.414e-3440.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOBH3.414e-3440.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOB13.414e-3440.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_SALRD3.414e-3438.62ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_LEPIC3.414e-3440.41ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SHISS4.459e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHIFL4.459e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHIF84.459e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHIDS4.459e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHIBS4.459e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
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