CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_PSEMY (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas mendocina (strain ymp) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 70/171 (40.94%), Postives = 109/171 (63.74%), Query Frame = -1
Query:  252 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 764
            D+++ L +ERVIF+   +++  +N I A +L+L++ +  K +++YIN PGG VT  +AIYDTMQ +K+ V T C+G A  +  FLLAGG KG R  +P SR+ +  P G  +GQA DI   A E+L +R+ + + L+  TGQ  E I +D +R     +  A+EYG++D +
Sbjct:   35 DIYSRLLKERVIFLVGQVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKADVSTTCIGQACSMGAFLLAGGAKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFIRERLNELLAHHTGQSLETIERDTNRDNFMSAPRAVEYGIVDAV 205          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_PSEA6 (ATP-dependent Clp protease proteolytic subunit OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 73/199 (36.68%), Postives = 123/199 (61.81%), Query Frame = -1
Query:  225 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII--RPPRIKED 812
            P V+ +T  GE S+   D+++ L +E VIF+   +++  +N I+A ML+L++ +  K +++YIN PGG VT  +AIYDTM  +K  V T C+G A  +  FLL+GG KG R  +P +R+ +  P G  +GQA D    A E+L +++ + + ++  TGQ ++K+ +D  R     +QE+++YGL+D+++  RP     D
Sbjct:   14 PMVVEQTAKGERSY---DIYSRLLKENVIFMVGQVEDHMANLIVAQMLFLEAENPEKDIFLYINSPGGSVTAGMAIYDTMNFIKPDVSTVCIGQAASMGAFLLSGGAKGKRYCLPNARVMIHQPLGGFQGQASDFEIHAKEILSIKEKMNRLMAAHTGQDYDKVARDTDRDNFLSAQESVDYGLVDQVLANRPDASNSD 209          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_PORGI (ATP-dependent Clp protease proteolytic subunit OS=Porphyromonas gingivalis GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 74/177 (41.81%), Postives = 107/177 (60.45%), Query Frame = -1
Query:  237 VDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 767
            +D+++ L  +R+IF+G  ID+  +N I A +LYLDS D  K + +Y+N PGG V     IYDTMQ +   V T C G A  +A  LL  G KG R A+P SR+ +  P G  +GQA D+   A E+LRV+  ++  +S  +G+P E++ KD  R     + EALEYG+ID+I+   R
Sbjct:   45 MDVFSRLMMDRIIFLGTQIDDYTANVIQAQLLYLDSADPGKDISIYLNSPGGSVYAGYGIYDTMQYIGCDVATICTGMAASMASVLLVAGTKGKRFALPHSRVMIHQPLGGMQGQASDLEIAAREILRVKKELYTIISSHSGKPVEQVEKDSDRDYWMTAPEALEYGMIDKILEKNR 221          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ECOUT (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli (strain UTI89 / UPEC) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 76/189 (40.21%), Postives = 119/189 (62.96%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L+V+  + + ++  TGQ  E+I +D  R +   + EA+EYGL+D I+
Sbjct:   18 PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ECOLI (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli (strain K12) GN=clpP PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 76/189 (40.21%), Postives = 119/189 (62.96%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L+V+  + + ++  TGQ  E+I +D  R +   + EA+EYGL+D I+
Sbjct:   18 PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ECOLC (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 76/189 (40.21%), Postives = 119/189 (62.96%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L+V+  + + ++  TGQ  E+I +D  R +   + EA+EYGL+D I+
Sbjct:   18 PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ECOL6 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O6 GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 76/189 (40.21%), Postives = 119/189 (62.96%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L+V+  + + ++  TGQ  E+I +D  R +   + EA+EYGL+D I+
Sbjct:   18 PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ECOL5 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 76/189 (40.21%), Postives = 119/189 (62.96%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L+V+  + + ++  TGQ  E+I +D  R +   + EA+EYGL+D I+
Sbjct:   18 PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ECOK1 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O1:K1 / APEC GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 76/189 (40.21%), Postives = 119/189 (62.96%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L+V+  + + ++  TGQ  E+I +D  R +   + EA+EYGL+D I+
Sbjct:   18 PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ECOHS (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O9:H4 (strain HS) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 76/189 (40.21%), Postives = 119/189 (62.96%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L+V+  + + ++  TGQ  E+I +D  R +   + EA+EYGL+D I+
Sbjct:   18 PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_PSEMY4.459e-3440.94ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEA64.459e-3436.68ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PORGI4.459e-3441.81ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOUT4.459e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOLI4.459e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOLC4.459e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOL64.459e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOL54.459e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOK14.459e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOHS4.459e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
back to top