CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:210..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ECO57 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O157:H7 GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 76/189 (40.21%), Postives = 119/189 (62.96%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L+V+  + + ++  TGQ  E+I +D  R +   + EA+EYGL+D I+
Sbjct:   18 PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_ECO24 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 76/189 (40.21%), Postives = 119/189 (62.96%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L+V+  + + ++  TGQ  E+I +D  R +   + EA+EYGL+D I+
Sbjct:   18 PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_DEIGD (ATP-dependent Clp protease proteolytic subunit OS=Deinococcus geothermalis (strain DSM 11300) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 79/195 (40.51%), Postives = 116/195 (59.49%), Query Frame = -1
Query:  228 PKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKE 812
            P V+ +T G G   + D+++ L ++R+IF+G  I+ + +N I+A +L LDS +  + + MYIN PGG+V   LAIYDTM+ +K+PV T CVG A  +   LL  G+KG R A+P SRI +   +   RG   D+  +A E+LR+RD +     R T  P EK+ +D+ R       EA +YGLID +I   R  E
Sbjct:    5 PYVIEQT-GRGERMY-DIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPDQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRLALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLRLRDTLIDIYHRHTNLPHEKLLRDMERDYFMSPYEAQQYGLIDSVIEHTRQPE 197          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_BACFR (ATP-dependent Clp protease proteolytic subunit OS=Bacteroides fragilis GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 73/173 (42.20%), Postives = 107/173 (61.85%), Query Frame = -1
Query:  249 VDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 767
            +D+++ L  +R+IF+G  ID+  +N + A +LYLDSVD  K + +YIN PGG V   L IYDTMQ + S V T C G A  +A  LL  G KG RSA+P SR+ +  P G A+GQA DI   A E+ +++  ++  ++  +G  F+K+  D  R     +QEA EYG+ID ++
Sbjct:   45 LDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGAKGKRSALPHSRVMIHQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSGTSFDKVWADSDRDYWMTAQEAKEYGMIDEVL 217          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_BACFN (ATP-dependent Clp protease proteolytic subunit OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 73/173 (42.20%), Postives = 107/173 (61.85%), Query Frame = -1
Query:  249 VDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 767
            +D+++ L  +R+IF+G  ID+  +N + A +LYLDSVD  K + +YIN PGG V   L IYDTMQ + S V T C G A  +A  LL  G KG RSA+P SR+ +  P G A+GQA DI   A E+ +++  ++  ++  +G  F+K+  D  R     +QEA EYG+ID ++
Sbjct:   32 LDVFSRLMMDRIIFLGTQIDDYTANTLQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGAKGKRSALPHSRVMIHQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSGTSFDKVWADSDRDYWMTAQEAKEYGMIDEVL 204          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_THEFY (ATP-dependent Clp protease proteolytic subunit 2 OS=Thermobifida fusca (strain YX) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 72/167 (43.11%), Postives = 105/167 (62.87%), Query Frame = -1
Query:  249 LYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 749
            L R+R++F+GQ +D+E +N+I+  +L L + D  + + +YIN PGG VT  +AIYD MQ + + V T  +G A  +   LL  G +G R A+P +RI +  P+G   G A DIR  AD+LL V+    + +S  TGQP E+I KD  R + F +QEALEYG ID ++
Sbjct:   26 LLRQRIVFLGQQVDDEIANRIVGELLLLSAEDRERDITLYINSPGGSVTAGMAIYDVMQYIPNDVRTVGIGLAASMGQMLLCAGTRGKRYALPHTRIMMHQPSGGIGGTASDIRILADQLLYVKKMFLERISLHTGQPVEQIEKDADRDRWFTAQEALEYGFIDEVL 192          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_DEIRA (ATP-dependent Clp protease proteolytic subunit OS=Deinococcus radiodurans GN=clpP PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.823e-34
Identity = 77/193 (39.90%), Postives = 119/193 (61.66%), Query Frame = -1
Query:  237 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 812
            P V+ +T  GE S+   D+++ L ++R+IF+G  ++ + +N I+A +L LDS +  + + MYIN PGG+V   LAIYDTM+ +K+PV T CVG A  +   LL  G+KG R A+P SRI +   +   RG   D+  +A E+L++RD +     + T  P EK+ +D+ R      +EAL+YGLID++I   R
Sbjct:    8 PYVIEQTGRGERSY---DIYSRLLKDRIIFVGTPVESQMANSIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGMAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLKLRDTLVDIYHKHTDLPQEKLLRDMERDYFMSPEEALKYGLIDQVIDQTR 197          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_COREF (ATP-dependent Clp protease proteolytic subunit 2 OS=Corynebacterium efficiens GN=clpP2 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.823e-34
Identity = 70/181 (38.67%), Postives = 114/181 (62.98%), Query Frame = -1
Query:  249 PGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 791
            PG G+    D+++ L RER+IF+G  +D+E +N++ A +L L + D ++ + +YIN PGG VT  +AIYDTM+     + T+ +G A  +  FLL+GG  G R A+P +RI +  P+    G A DI  +A++  + +  + K ++  TGQ FE++TKD  R + F +++A EYGL+D +I
Sbjct:   10 PGAGTGYSGDIFDRLLRERIIFLGSQVDDEIANKLCAQILLLSAEDPTRDISLYINSPGGSVTAGMAIYDTMKYSPCDIATYGMGLAASMGQFLLSGGTPGKRYALPHARIMMHQPSAGVGGTAADIAIQAEQFAQTKREMAKLIAEHTGQTFEQVTKDSDRDRWFTAEQAKEYGLVDHVI 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_SULNB (ATP-dependent Clp protease proteolytic subunit OS=Sulfurovum sp. (strain NBC37-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.605e-34
Identity = 68/180 (37.78%), Postives = 120/180 (66.67%), Query Frame = -1
Query:  249 GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 788
            GE S+   D+++ L ++R+I +   ++++ ++ I+A +L+L++ D  K +Y YIN PGG +T  L+++DTM  +K  + T C+G A  +  FLLA G KG R A+P +RI +  P+G A+GQ+ DI+ +A E+ R++D + + ++ KTG+  ++I KD  R     ++EA+EYGLID+++
Sbjct:   14 GERSY---DIYSRLLKDRIIMLSGEVNDQVASSIVAQLLFLEAQDPDKDIYFYINSPGGVITSGLSMFDTMNYIKPDIVTICIGQAASMGAFLLASGTKGKRYALPHARIMIHQPSGGAQGQSTDIQIQAQEIQRLKDTLNEIMAEKTGKTAKRIEKDTERDNFMSAKEAVEYGLIDKVL 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_NITEU (ATP-dependent Clp protease proteolytic subunit OS=Nitrosomonas europaea GN=clpP PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.605e-34
Identity = 72/199 (36.18%), Postives = 120/199 (60.30%), Query Frame = -1
Query:  225 IGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKED 821
            +G   ++  T G G   + D+++ L RER+IF+   + E  +N ++A +L+L+S +  K +++YIN PGG VT  LA+YDT+Q +K  V T CVG A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L ++  + + +++ TGQ  + I +D  R    G++ A++YGL+D ++    +K++
Sbjct:   17 LGLIPMVIETSGRGERAY-DIYSRLLRERIIFLVGPVTETSANLVIAQLLFLESENSEKDIFLYINSPGGLVTAGLAVYDTIQFIKPDVSTLCVGQAASMGAFLLTAGAKGKRYCLPNSRVMIHQPLGGFQGQASDIEIHAKEILALKSRLNEIMAKHTGQTVKAIERDTDRDNFLGAEAAVKYGLVDAVLTSREVKQE 214          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_ECO574.459e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECO244.459e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DEIGD4.459e-3440.51ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BACFR4.459e-3442.20ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BACFN4.459e-3442.20ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_THEFY4.459e-3443.11ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_DEIRA5.823e-3439.90ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_COREF5.823e-3438.67ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_SULNB7.605e-3437.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NITEU7.605e-3436.18ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
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