CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:210..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_LACJO (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus johnsonii GN=clpP PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.605e-34
Identity = 76/189 (40.21%), Postives = 118/189 (62.43%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE ++   D+++ L ++R+I +   I+++ +N I+A +L+LD+ D++K + +YIN PGG +T  LAI DTM  +KS V T  +G A  +A  LL  G KG R A+P S + +  P G A+GQ  DI+  A+E+L+ R  + + L   TGQP +KI KD  R     ++EA +YGLID I+
Sbjct:    4 PTVIEQTARGERAY---DIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISLYINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLIHQPLGGAQGQQTDIQIAANEILKSRKKLNQILHETTGQPLDKILKDTERDNYLSAEEAKDYGLIDEIL 189          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_LACGA (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=clpP PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.605e-34
Identity = 76/189 (40.21%), Postives = 118/189 (62.43%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE ++   D+++ L ++R+I +   I+++ +N I+A +L+LD+ D++K + +YIN PGG +T  LAI DTM  +KS V T  +G A  +A  LL  G KG R A+P S + +  P G A+GQ  DI+  A+E+L+ R  + + L   TGQP +KI KD  R     ++EA +YGLID I+
Sbjct:    4 PTVIEQTARGERAY---DIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISLYINSPGGVITSGLAIMDTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLIHQPLGGAQGQQTDIQIAANEILKSRKKLNQILHETTGQPLDKILKDTERDNYLSAEEAKDYGLIDEIL 189          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_CHLPN (ATP-dependent Clp protease proteolytic subunit 2 OS=Chlamydia pneumoniae GN=clpP2 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.605e-34
Identity = 70/173 (40.46%), Postives = 112/173 (64.74%), Query Frame = -1
Query:  249 VDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 767
            +D+++ L ++R++ IGQ I E  +N ++A +L+L S D  K + ++IN PGG +T  LAIYDT++ L   V T+C+G A  +   LL+ G KG R A+P SR+ +  P+G   G + DI+ +A E+L ++ ++   LS  TGQP EKI +D  R    G++EA+ YGLID+++
Sbjct:   18 MDIYSRLLKDRIVMIGQEITEPLANTVIAQLLFLMSEDPKKDIQIFINSPGGYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRHALPHSRMMIHQPSGGIIGTSADIQLQAAEILTLKKHLANILSECTGQPVEKIIEDSERDFFMGAEEAISYGLIDKVV 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_PEDPA (ATP-dependent Clp protease proteolytic subunit OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=clpP PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 71/172 (41.28%), Postives = 109/172 (63.37%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L ++R+I +   ID++ +N I++ +L+LD+ D  K +Y+YIN PGG VT  LAIYDTM  +KS V T  +G A  +A  L + G KG R A+P S + +  P+G A+GQ  +I   A+++L+ R  +   L+  +GQP EKI  D  R     +Q+A+EYGLID I+
Sbjct:   19 DIYSRLLKDRIIMLSGPIDDDLANSIISQLLFLDAQDSEKDIYLYINSPGGVVTAGLAIYDTMNFIKSDVQTIVMGMAASMASVLASSGTKGKRFALPHSEVMIHQPSGGAQGQQTEIEIAAEQILKTRKELNTILAENSGQPLEKINIDTERDNYLSAQDAVEYGLIDGIM 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_NITOC (ATP-dependent Clp protease proteolytic subunit OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=clpP PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 72/173 (41.62%), Postives = 109/173 (63.01%), Query Frame = -1
Query:  246 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 764
            D+++ L +ERV+F+   +++  +N ++A +L+L+S +  K +++YIN PGG VT  L+IYDTMQ +K  V T CVG A  +   LLAGG  G R  +P SR+ +  P G  +GQA DI   A E+L VR+ +   L++ TGQP EKI  D  R     + E+L YGL+D +++
Sbjct:   24 DIYSRLLKERVVFLVGPVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGLSIYDTMQFIKPDVSTLCVGQAASMGAVLLAGGAGGKRHCLPHSRLLIHQPLGGFQGQATDIDIHAREILLVRERLNHILAKHTGQPIEKIQHDTDRDYFMSATESLAYGLVDSVLK 196          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBB (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=clpP PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 75/189 (39.68%), Postives = 117/189 (61.90%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L +ER+I +   ++++ SN I++ +L+L+S D  K + +YIN PGG +T  +AIYDTMQ +K  V T CVG A  +  FLL+ G  G R A+P + I +  P G  +GQA DI+  A+ +L++++ + K LS  T QP E I  D+ R     + EA  YGL+D++I
Sbjct:    5 PMVVEQTSRGERSY---DIFSRLLKERIIMLSGEVNDDSSNLIVSQLLFLESEDPDKDISIYINSPGGSITAGMAIYDTMQYIKPDVSTICVGMAASMGAFLLSSGANGKRYALPNAEIMIHQPLGGFQGQATDIQIHANRILKIKESLNKILSENTNQPLEVIEADVERDNFMTADEAKTYGLVDKVI 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_BUCAP (ATP-dependent Clp protease proteolytic subunit OS=Buchnera aphidicola subsp. Schizaphis graminum GN=clpP PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 74/180 (41.11%), Postives = 115/180 (63.89%), Query Frame = -1
Query:  249 GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 788
            GE S+   D+++ L +ER+IFI   I++  ++ I+A ML+L++    K +++YIN PGG +T  ++IYDTMQ +K  V T C+G A  +A FLL+ G KG RS +P +RI +  P G  +GQA DI   A+E+ +++  + K +S  TGQ  +KI KD  R     + E+++YGLID I+
Sbjct:   18 GERSY---DIYSRLLKERIIFITGTIEDNMASSIVAQMLFLEAESLDKDIFLYINSPGGIITSGMSIYDTMQFIKPDVNTICIGQACSMAAFLLSSGTKGKRSCLPNARIMIHQPLGGYQGQASDIAIHAEEINKMKKKLNKLMSLNTGQSIKKINKDTERDCFLSAHESIKYGLIDLIL 194          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_RICRS (ATP-dependent Clp protease proteolytic subunit OS=Rickettsia rickettsii (strain Sheila Smith) GN=clpP PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.297e-33
Identity = 71/172 (41.28%), Postives = 108/172 (62.79%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L +ER+IF+   +++  +N I+A +L+L++ +  K +YMYIN PGG VT  LAIYDTMQ +K  V T C+G A  +   LL GGEKG R ++P SRI +  P+G  +GQA DI   A E L+++  + +  S+ T Q  + I K + R      +EA ++GL+D II
Sbjct:   19 DIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELQHIEKSMERDNFMSPEEAKKFGLVDNII 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_LACCB (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus casei (strain BL23) GN=clpP PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.297e-33
Identity = 71/172 (41.28%), Postives = 110/172 (63.95%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L ++R+I +   ++++ +N ++A +L+LD+ D  K +Y+YIN PGG +T  LA+ DTM  +KS V T  +G A  +A  LLAGG KG R A+P S I +  P+G A+GQ  +I   A+E+L+ R  + + L+  TGQ  E+I KD  R     +QEA +YGLID I+
Sbjct:   18 DIYSRLLKDRIIMLSGEVNDQMANSVIAQLLFLDAQDSEKDIYLYINSPGGVITSGLAMLDTMNFIKSDVQTIAIGMAASMASVLLAGGTKGKRFALPNSTILIHQPSGGAQGQQTEIEIAAEEILKTRRKMNQILADATGQTIEQIKKDTERDHYMSAQEAKDYGLIDDIL 189          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_LACC3 (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus casei (strain ATCC 334) GN=clpP PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.297e-33
Identity = 71/172 (41.28%), Postives = 110/172 (63.95%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L ++R+I +   ++++ +N ++A +L+LD+ D  K +Y+YIN PGG +T  LA+ DTM  +KS V T  +G A  +A  LLAGG KG R A+P S I +  P+G A+GQ  +I   A+E+L+ R  + + L+  TGQ  E+I KD  R     +QEA +YGLID I+
Sbjct:   18 DIYSRLLKDRIIMLSGEVNDQMANSVIAQLLFLDAQDSEKDIYLYINSPGGVITSGLAMLDTMNFIKSDVQTIAIGMAASMASVLLAGGTKGKRFALPNSTILIHQPSGGAQGQQTEIEIAAEEILKTRRKMNQILADATGQTIEQIKKDTERDHYMSAQEAKDYGLIDDIL 189          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_LACJO7.605e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACGA7.605e-3440.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_CHLPN7.605e-3440.46ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_PEDPA9.933e-3441.28ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NITOC9.933e-3441.62ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOBB9.933e-3439.68ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BUCAP9.933e-3441.11ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RICRS1.297e-3341.28ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACCB1.297e-3341.28ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACC31.297e-3341.28ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
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