CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_BOVIN (Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial OS=Bos taurus GN=CLPP PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.775e-33
Identity = 70/183 (38.25%), Postives = 115/183 (62.84%), Query Frame = -1
Query:  219 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI-IRPPRIKEDMP 764
            D+++ L RER++ +   ID+  ++ ++A +L+L S  + K ++MYIN PGG VT  LAIYDTMQ + +P+ T CVG A  +   LLA G  G R ++P SRI +  P+G ARGQA DI  +A+E+++++  ++   ++ T Q  + I   + R +     EA E+G++D++ + PP+  ED P
Sbjct:   70 DIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGEDEP 252          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_FRASC (ATP-dependent Clp protease proteolytic subunit 2 OS=Frankia sp. (strain CcI3) GN=clpP2 PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.775e-33
Identity = 72/174 (41.38%), Postives = 108/174 (62.07%), Query Frame = -1
Query:  246 VDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 767
            +D ++ L +ER++F+G  ID+  +N ++A +L+L+S D  + + +YIN PGG  T   AIYDTMQ ++  + T C+G A   A  LLA G  G R A+  SRI +  P+    GQ+ DI  +A E+LR+R  + + L+  TG+  E I KD+ R K F + EA EYGLID +I+
Sbjct:   33 MDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISIYINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILIHQPSAQGEGQSSDIEIQAREILRMRSLLERMLAVHTGKKEEDIRKDIERDKIFSADEAKEYGLIDEVIK 206          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_RICPR (ATP-dependent Clp protease proteolytic subunit OS=Rickettsia prowazekii GN=clpP PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.930e-33
Identity = 71/172 (41.28%), Postives = 108/172 (62.79%), Query Frame = -1
Query:  249 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 764
            D+++ L +ER+IF+   +++  +N I+A +L+L++ +  K +YMYIN PGG VT  LAIYDTMQ +K  V T C+G A  +   LL GGE G R ++P SRI +  P+G  +GQA DI   A E L+++  + +  S+ T Q  + I K + R     S+EA ++GL+D II
Sbjct:   19 DIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQFIKPKVATLCIGQACSMGSLLLCGGEHGMRYSLPHSRIMIHQPSGGYKGQATDIEIHARETLKIKRLLNELYSKHTKQELKYIEKSMERDNFMSSEEAKKFGLVDNII 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_MAGSA (ATP-dependent Clp protease proteolytic subunit OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=clpP PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 4.930e-33
Identity = 80/198 (40.40%), Postives = 122/198 (61.62%), Query Frame = -1
Query:  225 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII-RPPRIKED 812
            P V+ +T  GE S+   D+++ L +ER+IF+   + +E ++ I A +L+L+S + SK +  YIN PGG VT  LAIYDTMQ ++  V T C+G A  +   L+  GEKG R ++P SRI +  P+G A+GQA DI  +A E+L +R  +       TGQP + I K + R K   + EA E+GLID ++ + P +++D
Sbjct:    6 PMVVEQTNRGERSY---DIYSRLLKERIIFLTGQVYDEVASLICAQLLFLESENPSKDIAFYINSPGGVVTSGLAIYDTMQYIRPKVSTVCIGQAASMGSLLMTAGEKGKRFSLPNSRIMVHQPSGGAQGQATDIEIQAREILALRARLNNIYVEHTGQPLDVIEKVMERDKFMTADEAKEFGLIDEVVNKRPAVEDD 200          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_LISMO (ATP-dependent Clp protease proteolytic subunit OS=Listeria monocytogenes GN=clpP PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.930e-33
Identity = 73/189 (38.62%), Postives = 118/189 (62.43%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE ++   D+++ L ++R+I +G  ID+  +N I++ +L+LD+ D  K +++YIN PGG ++  +AIYDTM  +K+ V T  +G A  +  FLL  G  G R A+P + I +  P G A+GQA +I   A  +L++++ +   ++ KTGQP+E I +D  R     +QEA +YGLID II
Sbjct:    5 PTVIEQTSRGERAY---DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDII 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_LISMF (ATP-dependent Clp protease proteolytic subunit OS=Listeria monocytogenes serotype 4b (strain F2365) GN=clpP PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.930e-33
Identity = 73/189 (38.62%), Postives = 118/189 (62.43%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE ++   D+++ L ++R+I +G  ID+  +N I++ +L+LD+ D  K +++YIN PGG ++  +AIYDTM  +K+ V T  +G A  +  FLL  G  G R A+P + I +  P G A+GQA +I   A  +L++++ +   ++ KTGQP+E I +D  R     +QEA +YGLID II
Sbjct:    5 PTVIEQTSRGERAY---DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDII 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_LISIN (ATP-dependent Clp protease proteolytic subunit OS=Listeria innocua GN=clpP PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.930e-33
Identity = 73/189 (38.62%), Postives = 118/189 (62.43%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE ++   D+++ L ++R+I +G  ID+  +N I++ +L+LD+ D  K +++YIN PGG ++  +AIYDTM  +K+ V T  +G A  +  FLL  G  G R A+P + I +  P G A+GQA +I   A  +L++++ +   ++ KTGQP+E I +D  R     +QEA +YGLID II
Sbjct:    5 PTVIEQTSRGERAY---DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDII 190          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_LACPL (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus plantarum GN=clpP PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.930e-33
Identity = 73/178 (41.01%), Postives = 110/178 (61.80%), Query Frame = -1
Query:  231 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 764
            D+++ L ++R+I +   I++  +N I+A +L+LD+ D  K +Y+YIN PGG VT  LAIYDTM  +KS V T  +G A  +A  L + G KG R A+P S I +  P+G A+GQ  +I   A+E+L+ R  I + L+  +GQ  EK+  D  R     +QEA +YGLID I+   ++K
Sbjct:   19 DIYSRLLKDRIIMLSGPIEDNMANAIIAQLLFLDAQDSGKDIYLYINSPGGVVTAGLAIYDTMNFIKSDVQTIVMGMAASMASVLASSGTKGKRFALPNSEILIHQPSGGAQGQQTEIEIVAEEILKTRKKINQILADNSGQSVEKLNHDTERDNYLSAQEAKDYGLIDDIMENNKLK 196          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_HELHP (ATP-dependent Clp protease proteolytic subunit OS=Helicobacter hepaticus GN=clpP PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.930e-33
Identity = 74/189 (39.15%), Postives = 116/189 (61.38%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ RT  GE S+   D+++ L ++R+I +   I++  ++ I+A +L+L++ D  K +  YIN PGG +T   +IYDTM  + S + T C+G A     FLL+ G KG R ++P SRI +  P G A+GQA DI  +A E+LR++  + + ++  TGQ  EKIT+D  R      +EA +YGL+D I+
Sbjct:    6 PYVIERTGRGERSY---DIYSRLLKDRIILLSGEINDHIASSIVAQLLFLEAEDPEKDINFYINSPGGVITSAFSIYDTMNYIHSDISTICIGQAASAGAFLLSSGTKGKRFSLPNSRIMIHQPLGGAQGQATDIEIQAREILRLKKILNEIMAHNTGQKIEKITQDTERDFFMSGEEAKKYGLVDEIL 191          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CAMLR (ATP-dependent Clp protease proteolytic subunit OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=clpP PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.930e-33
Identity = 77/189 (40.74%), Postives = 117/189 (61.90%), Query Frame = -1
Query:  249 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 812
            P V+ +T  GE S+   D+++ L ++R+I +   I+++ +  I+A +L+L++ D  K +Y+YIN PGG VT   +IYDTM  +K+ V T C+G A  +  FLL+ G  G R A+P SRI +  P G ARGQA DI  +A E+LR++  +   L++ T Q   KI KD  R     + EA EYGLID+++
Sbjct:    6 PYVVEKTSRGERSY---DIYSRLLKDRIIMLSGEINDDLAASIVAQLLFLEAEDPQKDIYLYINSPGGVVTSGFSIYDTMNYIKADVSTICIGQAASMGAFLLSCGAPGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKAILNDILAKNTKQKLSKIEKDTDRDFFMSAIEAKEYGLIDKVL 191          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_BOVIN3.775e-3338.25Putative ATP-dependent Clp protease proteolytic su... [more]
CLPP2_FRASC3.775e-3341.38ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_RICPR4.930e-3341.28ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MAGSA4.930e-3340.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LISMO4.930e-3338.62ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LISMF4.930e-3338.62ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LISIN4.930e-3338.62ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACPL4.930e-3341.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HELHP4.930e-3339.15ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAMLR4.930e-3340.74ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
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