CN186342

Overview
NameCN186342
Unique NameCN186342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: NCALD_HUMAN (Neurocalcin-delta OS=Homo sapiens GN=NCALD PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.395e-11
Identity = 54/177 (30.51%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  279 PEI---LARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA--TLAESGMNLSDD--VIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK 782
            PE+   L   T F+  EI+  Y+ F +   +    G ++ EEF+     F      S FA+ VF  FD   +G + F EF  ALSV      ++ K++++F +YDL   G+I + E+ ++V A   +  S M + +D    E   +K F + DT  DGK+  EE+       PS+++
Sbjct:   10 PEVMQDLLESTDFTEHEIQEWYKGFLRDCPS----GHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSV-TSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVR 181          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: NCALD_BOVIN (Neurocalcin-delta OS=Bos taurus GN=NCALD PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.395e-11
Identity = 54/177 (30.51%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  279 PEI---LARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA--TLAESGMNLSDD--VIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK 782
            PE+   L   T F+  EI+  Y+ F +   +    G ++ EEF+     F      S FA+ VF  FD   +G + F EF  ALSV      ++ K++++F +YDL   G+I + E+ ++V A   +  S M + +D    E   +K F + DT  DGK+  EE+       PS+++
Sbjct:   10 PEVMQDLLESTDFTEHEIQEWYKGFLRDCPS----GHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSV-TSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVR 181          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: CANB2_BOVIN (Calcineurin subunit B type 2 OS=Bos taurus GN=PPP3R2 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.395e-11
Identity = 48/155 (30.97%), Postives = 76/155 (49.03%), Query Frame = -3
Query:  303 FSVSEIEALYELFKKI----SSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLV 755
            F   EI+ L + FKK+    SSA+      +  E Q         E+    RV D+FDT  +G + F EF    S F      + K+ F+F +YD+ + G+I   E+ Q++   +   G NL D  ++ ++DKT    D   DGKI  +E+ ++V
Sbjct:   15 FDEDEIKRLRKRFKKLDLDSSSALSVKEFTSMPELQ---------ENPLVQRVIDVFDTDGDGQVDFREFILGTSQFSVRGDEEQKLRFAFSIYDMDKDGYISNGELFQVLKMMV---GDNLKDWQLQQLVDKTIILLDKDGDGKISFQEFSAVV 157          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: NCALD_XENTR (Neurocalcin-delta OS=Xenopus tropicalis GN=ncald PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.741e-11
Identity = 54/177 (30.51%), Postives = 87/177 (49.15%), Query Frame = -3
Query:  279 PEI---LARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA--TLAESGMNLSDD--VIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK 782
            PE+   L   T F+  EI+  Y+ F +   +    G +  EEF+     F      S FA+ VF  FD   +G + F EF  ALSV      ++ K++++F +YDL   G+I + E+ ++V A   +  S M + +D    E   +K F + DT  DGK+  EE+       PS+++
Sbjct:   10 PEVMQDLLESTDFTEHEIQEWYKGFLRDCPS----GHLTMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSV-TSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVR 181          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: NCALD_XENLA (Neurocalcin-delta OS=Xenopus laevis GN=ncald PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.741e-11
Identity = 54/177 (30.51%), Postives = 87/177 (49.15%), Query Frame = -3
Query:  279 PEI---LARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA--TLAESGMNLSDD--VIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK 782
            PE+   L   T F+  EI+  Y+ F +   +    G +  EEF+     F      S FA+ VF  FD   +G + F EF  ALSV      ++ K++++F +YDL   G+I + E+ ++V A   +  S M + +D    E   +K F + DT  DGK+  EE+       PS+++
Sbjct:   10 PEVMQDLLESTDFTEHEIQEWYKGFLRDCPS----GNLTMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSV-TSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVR 181          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: CHP1_BOVIN (Calcium-binding protein p22 OS=Bos taurus GN=CHP PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.741e-11
Identity = 56/196 (28.57%), Postives = 97/196 (49.49%), Query Frame = -3
Query:  258 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ----LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHP----------NAPI-----DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYL 788
            E+ E + +ET FS S+I  LY  F  +     ++G +++E+FQ    LA+       +   DR+ + F  +    + F  F R L+ F P          N P       +K+ F+F+LYDL +   I R E+ Q++   +   G+N+SD+ + +I D+T +EAD   D  I   E+   VL    + + M++++L
Sbjct:   12 EELEEIKKETGFSHSQITRLYSRFTSLDKG--ENGTLSREDFQRIPELAI-------NPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMV---GVNISDEQLGSIADRTIQEADQDGDSAISFTEFVK-VLEKVDVEQKMSIRFL 194          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: CHP1_PONAB (Calcium-binding protein p22 OS=Pongo abelii GN=CHP PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 56/196 (28.57%), Postives = 97/196 (49.49%), Query Frame = -3
Query:  258 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ----LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHP----------NAPI-----DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYL 788
            E+ E + +ET FS S+I  LY  F  +     ++G +++E+FQ    LA+       +   DR+ + F  +    + F  F R L+ F P          N P       +K+ F+F+LYDL +   I R E+ Q++   +   G+N+SD+ + +I D+T +EAD   D  I   E+   VL    + + M++++L
Sbjct:   12 EELEEIKKETGFSHSQITRLYSRFTSLDKG--ENGTLSREDFQRIPELAI-------NPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDEKISRDELLQVLRMMV---GVNISDEQLGSIADRTIQEADQDGDSAISFTEFVK-VLEKVDVEQKMSIRFL 194          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: CHP1_HUMAN (Calcium-binding protein p22 OS=Homo sapiens GN=CHP PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 56/196 (28.57%), Postives = 97/196 (49.49%), Query Frame = -3
Query:  258 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ----LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHP----------NAPI-----DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYL 788
            E+ E + +ET FS S+I  LY  F  +     ++G +++E+FQ    LA+       +   DR+ + F  +    + F  F R L+ F P          N P       +K+ F+F+LYDL +   I R E+ Q++   +   G+N+SD+ + +I D+T +EAD   D  I   E+   VL    + + M++++L
Sbjct:   12 EELEEIKKETGFSHSQITRLYSRFTSLDKG--ENGTLSREDFQRIPELAI-------NPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDEKISRDELLQVLRMMV---GVNISDEQLGSIADRTIQEADQDGDSAISFTEFVK-VLEKVDVEQKMSIRFL 194          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: CHP1_CHICK (Calcium-binding protein p22 OS=Gallus gallus GN=CHP PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 56/196 (28.57%), Postives = 98/196 (50.00%), Query Frame = -3
Query:  258 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ----LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHP----------NAPI-----DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYL 788
            E+ E + +ET FS S+I  LY  F  +     ++G +++E+FQ    LA+       +   DR+ + F ++    + F  F R L+ F P          N P       +K+ F+F+LYDL +   I R E+ Q++   +   G+N+SD+ + +I D+T +EAD   D  I   E+   VL    + + M++++L
Sbjct:   12 EEIEEIKKETGFSHSQITRLYSRFTSLDKG--ENGTLSREDFQRIPELAI-------NPLGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDQNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMV---GVNISDEQLGSIADRTIQEADQDGDCAISFAEFVK-VLEKVDVEQKMSIRFL 194          
The following BLAST results are available for this feature:
BLAST of CN186342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
NCALD_HUMAN4.395e-1130.51Neurocalcin-delta OS=Homo sapiens GN=NCALD PE=2 SV... [more]
NCALD_BOVIN4.395e-1130.51Neurocalcin-delta OS=Bos taurus GN=NCALD PE=1 SV=2[more]
CANB2_BOVIN4.395e-1130.97Calcineurin subunit B type 2 OS=Bos taurus GN=PPP3... [more]
NCALD_XENTR5.741e-1130.51Neurocalcin-delta OS=Xenopus tropicalis GN=ncald P... [more]
NCALD_XENLA5.741e-1130.51Neurocalcin-delta OS=Xenopus laevis GN=ncald PE=2 ... [more]
CHP1_BOVIN5.741e-1128.57Calcium-binding protein p22 OS=Bos taurus GN=CHP P... [more]
CHP1_PONAB7.497e-1128.57Calcium-binding protein p22 OS=Pongo abelii GN=CHP... [more]
CHP1_HUMAN7.497e-1128.57Calcium-binding protein p22 OS=Homo sapiens GN=CHP... [more]
CHP1_CHICK7.497e-1128.57Calcium-binding protein p22 OS=Gallus gallus GN=CH... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002M02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186342 ID=CN186342; Name=CN186342; organism=Citrus sinensis; type=EST; length=904bp
TTTTTAGCGGGTAGAACCATAATTTTTATACTAAATACACAAAAACAAAC
ATCCTCAAAAAAGAAACCAATACCAATACGATGCAGAAGCAACACTCTCC
CATGCCCTTCACAATCATGCACGAGAGAGCCATGTTGTCTATAAATAAAC
AAAACATAAAAATAACAATCTCTCTTGAGCTCTAACCGTTCCCTAGTTTA
GGTATCTTCAACTCTTGAATGGAACACAAAGCTCGGGAACGTTGTTGTGA
TGTCCTTGAGGTACTGGAGGGTCATATTCTTCAAAAGTGATGGATGACGC
AAAACAAGGCTTCTCCACTCTTCCTTGTCGATCTTCCCATCATGTTTTGT
ATCAGCTTCTTCAAAGGTCTTATCAATTATAGTTTCTATAACATCATCCG
AAAGATTCATGCCAGATTCTGCAAGTGTAGCTACCACCATTTGCTTCACC
TCCTGCCTCTCAATAAAACCTTGCTGCTTGAGATCATATAGTTGAAAAGA
GAACTCAATTTTATCATCAATTGGGGCATTTGGATGGAAAACAGAAAGAG
CACGAGCAAACTCTTCAAACCCTAGTATTCCATTGTGCTTTGTATCAAAT
AAGTCAAAAACCCGATCAGCAAACAAGCTCTCTTTTTTGTTTGTCTTGAA
TAATGCTAACTGGAACTCTTCCTTGTTAATTAGACCGTCATCAATCACAG
CACTGCTAATCTTCTTAAAGAGCTCATACAGTGCCTCGATTTCACTTACA
CTAAAAACTGTCTCTCTCGCAAGTATTTCAGGATCTTCGAGGCCCCTAGA
CGGATTTGTATCACAACACTGCAATAGGGAAGCAAATAAATGCTTAAATC
CCTCTATGCACTGCAACATGATAGTCTCTGCACATCAAAACACTCCATAC
CTTT
back to top