CN186342

Overview
NameCN186342
Unique NameCN186342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: HPCA_HUMAN (Neuron-specific calcium-binding protein hippocalcin OS=Homo sapiens GN=HPCA PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.614e-13
Identity = 56/171 (32.75%), Postives = 88/171 (51.46%), Query Frame = -3
Query:  279 LARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA--TLAESGMNLSDD--VIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK 773
            L   T FS  E++  Y+ F K        G++N +EF+   A F      S FA+ VF  FDT  +G + F EF  ALSV      ++ K+ ++F +YDL   G+I R+E+ ++V A   +  S M + +D    E   +K F + DT +DGK+  EE+       PS+++
Sbjct:   16 LRENTEFSELELQEWYKGFLKDCPT----GILNVDEFKKIYANFFPYGDASKFAEHVFRTFDTNSDGTIDFREFIIALSV-TSRGRLEQKLMWAFSMYDLDGNGYISREEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVR 181          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: HPCA_BOVIN (Neuron-specific calcium-binding protein hippocalcin OS=Bos taurus GN=HPCA PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.614e-13
Identity = 56/171 (32.75%), Postives = 88/171 (51.46%), Query Frame = -3
Query:  279 LARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA--TLAESGMNLSDD--VIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK 773
            L   T FS  E++  Y+ F K        G++N +EF+   A F      S FA+ VF  FDT  +G + F EF  ALSV      ++ K+ ++F +YDL   G+I R+E+ ++V A   +  S M + +D    E   +K F + DT +DGK+  EE+       PS+++
Sbjct:   16 LRENTEFSELELQEWYKGFLKDCPT----GILNVDEFKKIYANFFPYGDASKFAEHVFRTFDTNSDGTIDFREFIIALSV-TSRGRLEQKLMWAFSMYDLDGNGYISREEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVR 181          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: CANB2_DROME (Calcineurin subunit B type 2 OS=Drosophila melanogaster GN=CanB2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.753e-13
Identity = 47/151 (31.13%), Postives = 80/151 (52.98%), Query Frame = -3
Query:  303 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLV 755
            F   EI  L + F+K+   + + G ++ +EF   +     +++    RV D+FD   NG + F+EF + +S F        K+ F+F++YD+   G+I   E+ Q++   +   G NL D  ++ I+DKT   AD   DGKI  +E+ S+V
Sbjct:   15 FDADEIRRLGKRFRKLD--LDNSGALSVDEF---MSLPELQQNPLVQRVIDIFDADGNGEVDFKEFIQGVSQFSVKGDKLSKLRFAFRIYDMDNDGYISNGELFQVLKMMV---GNNLKDTQLQQIVDKTIGFADKDEDGKISFDEFCSVV 157          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: NCS1_SCHPO (Calcium-binding protein NCS-1 OS=Schizosaccharomyces pombe GN=ncs1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.596e-13
Identity = 57/175 (32.57%), Postives = 87/175 (49.71%), Query Frame = -3
Query:  267 LARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNL----SDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTL 773
            L R T F   E++  Y+ F K   +    G +NK EFQ     F      S FA+ VF++FD   NG + F+EF  ALSV      ++DK+ ++FQLYDL   G I   E+ ++V A     G  +     +D  E  ++K F   D   DG++  EE+     R P+++  ++L
Sbjct:   16 LVRSTRFDKKELQQWYKGFFKDCPS----GHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSV-TSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSALSL 185          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: KCIP2_MUSPF (Kv channel-interacting protein 2 OS=Mustela putorius furo GN=Kcnip2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.596e-13
Identity = 50/180 (27.78%), Postives = 91/180 (50.56%), Query Frame = -3
Query:  267 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGM----NLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTL 788
            E  E L  +T F+  E++ LY  FK    +    G++N+E F+   + F      S +A  +F+ FDT H+G + FE+F   LSV      IDD++ ++F LYDL + G I ++E+  ++ +     G      L ++     ++  F++ D   DG +  EE+     +  +++++M L
Sbjct:   91 EGLEQLQEQTKFTRKELQVLYRGFKNECPS----GIVNEENFKQIYSQFFPQGDSSTYATFLFNAFDTNHDGSVSFEDFVAGLSVI-LRGTIDDRLNWAFNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEAPREHVESFFQKMDRNKDGVVTIEEFIESCQKDENIMRSMQL 265          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: NCS1_PONAB (Neuronal calcium sensor 1 OS=Pongo abelii GN=FREQ PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 55/176 (31.25%), Postives = 89/176 (50.57%), Query Frame = -3
Query:  267 EILARETVFSVSEIEALYELF-KKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNL----SDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTL 779
            E L R+T F+  E++  Y+ F K   S  +D     K   Q   F    K   FA  VF++FD   +G +GF EF +ALSV      +D+K+ ++F+LYDL   G+I R E+  +V A     G  +     ++  E  +D+ F   D   DGK+  +E++      PS+++ ++L
Sbjct:   14 EELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTK---FATFVFNVFDENKDGRIGFSEFIQALSV-TSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQALSL 185          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: KCIP2_HUMAN (Kv channel-interacting protein 2 OS=Homo sapiens GN=KCNIP2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 49/180 (27.22%), Postives = 91/180 (50.56%), Query Frame = -3
Query:  267 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGM----NLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTL 788
            E  E L  +T F+  E++ LY  FK    +    G++N+E F+   + F      S +A  +F+ FDT H+G + FE+F   LSV      +DD++ ++F LYDL + G I ++E+  ++ +     G      L ++     ++  F++ D   DG +  EE+     +  +++++M L
Sbjct:   91 EGLEQLQEQTKFTRKELQVLYRGFKNECPS----GIVNEENFKQIYSQFFPQGDSSTYATFLFNAFDTNHDGSVSFEDFVAGLSVI-LRGTVDDRLNWAFNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEAPREHVESFFQKMDRNKDGVVTIEEFIESCQKDENIMRSMQL 265          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: HPCL1_XENLA (Hippocalcin-like protein 1 OS=Xenopus laevis GN=hpcal1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = -3
Query:  279 PEILA---RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA--TLAESGMNLSDD--VIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK 782
            PEIL      T F+  E++  Y+ F K        G +  EEF+   A F      S FA+ VF  FDT  +G + F EF  ALSV      ++ K++++F +YDL   G+I R E+ ++V A   +  S M + +D    E   DK F++ DT +DGK+  EE+       PS+++
Sbjct:   10 PEILQDLRENTEFTDHELQEWYKGFLKDCPT----GHLTVEEFKKIYANFFPYGDASKFAEHVFRTFDTNGDGTIDFREFIIALSV-TSRGKLEQKLKWAFSMYDLDGNGYISRGEMLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFKQMDTNNDGKLSLEEFIKGAKSDPSIVR 181          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: KCIP4_RAT (Kv channel-interacting protein 4 OS=Rattus norvegicus GN=Kcnip4 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.133e-13
Identity = 45/177 (25.42%), Postives = 92/177 (51.98%), Query Frame = -3
Query:  267 EILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGM----NLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTL 779
            E+L  ++ F+  E++ LY  FK    +    G++N+E F+   + F      + +A  +F+ FDT HNG + FE+F + LS+      + +K+ ++F LYD+ + G+I ++E+  ++ A     G      L +D     ++  F++ D   DG +  +E+     +  +++++M L
Sbjct:   74 ELLEAQSKFTKKELQILYRGFKNECPS----GVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSIL-LRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQKDENIMRSMQL 245          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: KCIP4_MOUSE (Kv channel-interacting protein 4 OS=Mus musculus GN=Kcnip4 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.133e-13
Identity = 45/177 (25.42%), Postives = 92/177 (51.98%), Query Frame = -3
Query:  267 EILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGM----NLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTL 779
            E+L  ++ F+  E++ LY  FK    +    G++N+E F+   + F      + +A  +F+ FDT HNG + FE+F + LS+      + +K+ ++F LYD+ + G+I ++E+  ++ A     G      L +D     ++  F++ D   DG +  +E+     +  +++++M L
Sbjct:   74 ELLEAQSKFTKKELQILYRGFKNECPS----GVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSIL-LRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQKDENIMRSMQL 245          
The following BLAST results are available for this feature:
BLAST of CN186342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
HPCA_HUMAN1.614e-1332.75Neuron-specific calcium-binding protein hippocalci... [more]
HPCA_BOVIN1.614e-1332.75Neuron-specific calcium-binding protein hippocalci... [more]
CANB2_DROME2.753e-1331.13Calcineurin subunit B type 2 OS=Drosophila melanog... [more]
NCS1_SCHPO3.596e-1332.57Calcium-binding protein NCS-1 OS=Schizosaccharomyc... [more]
KCIP2_MUSPF3.596e-1327.78Kv channel-interacting protein 2 OS=Mustela putori... [more]
NCS1_PONAB4.696e-1331.25Neuronal calcium sensor 1 OS=Pongo abelii GN=FREQ ... [more]
KCIP2_HUMAN4.696e-1327.22Kv channel-interacting protein 2 OS=Homo sapiens G... [more]
HPCL1_XENLA4.696e-1333.33Hippocalcin-like protein 1 OS=Xenopus laevis GN=hp... [more]
KCIP4_RAT6.133e-1325.42Kv channel-interacting protein 4 OS=Rattus norvegi... [more]
KCIP4_MOUSE6.133e-1325.42Kv channel-interacting protein 4 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186342 ID=CN186342; Name=CN186342; organism=Citrus sinensis; type=EST; length=904bp
TTTTTAGCGGGTAGAACCATAATTTTTATACTAAATACACAAAAACAAAC
ATCCTCAAAAAAGAAACCAATACCAATACGATGCAGAAGCAACACTCTCC
CATGCCCTTCACAATCATGCACGAGAGAGCCATGTTGTCTATAAATAAAC
AAAACATAAAAATAACAATCTCTCTTGAGCTCTAACCGTTCCCTAGTTTA
GGTATCTTCAACTCTTGAATGGAACACAAAGCTCGGGAACGTTGTTGTGA
TGTCCTTGAGGTACTGGAGGGTCATATTCTTCAAAAGTGATGGATGACGC
AAAACAAGGCTTCTCCACTCTTCCTTGTCGATCTTCCCATCATGTTTTGT
ATCAGCTTCTTCAAAGGTCTTATCAATTATAGTTTCTATAACATCATCCG
AAAGATTCATGCCAGATTCTGCAAGTGTAGCTACCACCATTTGCTTCACC
TCCTGCCTCTCAATAAAACCTTGCTGCTTGAGATCATATAGTTGAAAAGA
GAACTCAATTTTATCATCAATTGGGGCATTTGGATGGAAAACAGAAAGAG
CACGAGCAAACTCTTCAAACCCTAGTATTCCATTGTGCTTTGTATCAAAT
AAGTCAAAAACCCGATCAGCAAACAAGCTCTCTTTTTTGTTTGTCTTGAA
TAATGCTAACTGGAACTCTTCCTTGTTAATTAGACCGTCATCAATCACAG
CACTGCTAATCTTCTTAAAGAGCTCATACAGTGCCTCGATTTCACTTACA
CTAAAAACTGTCTCTCTCGCAAGTATTTCAGGATCTTCGAGGCCCCTAGA
CGGATTTGTATCACAACACTGCAATAGGGAAGCAAATAAATGCTTAAATC
CCTCTATGCACTGCAACATGATAGTCTCTGCACATCAAAACACTCCATAC
CTTT
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