CN186342

Overview
NameCN186342
Unique NameCN186342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1514 contig Csv1_Contig1514:187..1090. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: KCIP2_MOUSE (Kv channel-interacting protein 2 OS=Mus musculus GN=Kcnip2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12
Identity = 50/180 (27.78%), Postives = 91/180 (50.56%), Query Frame = -3
Query:  267 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGM----NLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTL 788
            E  E L  +T F+  E++ LY  FK    +    G++N+E F+   + F      S +A  +F+ FDT H+G + FE+F   LSV      IDD++ ++F LYDL + G I ++E+  ++ +     G      L ++     ++  F++ D   DG +  EE+     +  +++++M L
Sbjct:   91 EGLEQLQEQTKFTRRELQVLYRGFKNECPS----GIVNEENFKQIYSQFFPQGDSSNYATFLFNAFDTNHDGSVSFEDFVAGLSVI-LRGTIDDRLNWAFNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEAPREHVESFFQKMDRNKDGVVTIEEFIESCQQDENIMRSMQL 265          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: HPCL1_SHEEP (Hippocalcin-like protein 1 OS=Ovis aries GN=HPCAL1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = -3
Query:  279 PEILA---RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA--TLAESGMNLSDD--VIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK 782
            PE+L      T F+  E++  Y+ F K        G +  +EF+   A F      S FA+ VF  FDT  +G + F EF  ALSV      ++ K++++F +YDL   G+I R E+ ++V A   +  S M + +D    E   DK F + DT +DGK+  EE+       PS+++
Sbjct:   10 PEVLQDLRENTEFTDHELQEWYKGFLKDCPT----GHLTVDEFKKIYANFFPYGDASKFAEHVFRTFDTNGDGTIDFREFIIALSV-TSRGKLEQKLKWAFSMYDLDGNGYISRSEMLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIKGAKSDPSIVR 181          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: HPCL1_PIG (Hippocalcin-like protein 1 OS=Sus scrofa GN=HPCAL1 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = -3
Query:  279 PEILA---RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA--TLAESGMNLSDD--VIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK 782
            PE+L      T F+  E++  Y+ F K        G +  +EF+   A F      S FA+ VF  FDT  +G + F EF  ALSV      ++ K++++F +YDL   G+I R E+ ++V A   +  S M + +D    E   DK F + DT +DGK+  EE+       PS+++
Sbjct:   10 PEVLQDLRENTEFTDHELQEWYKGFLKDCPT----GHLTVDEFKKIYANFFPYGDASKFAEHVFRTFDTNGDGTIDFREFIIALSV-TSRGKLEQKLKWAFSMYDLDGNGYISRSEMLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIKGAKSDPSIVR 181          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: HPCL1_BOVIN (Hippocalcin-like protein 1 OS=Bos taurus GN=HPCAL1 PE=1 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = -3
Query:  279 PEILA---RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA--TLAESGMNLSDD--VIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK 782
            PE+L      T F+  E++  Y+ F K        G +  +EF+   A F      S FA+ VF  FDT  +G + F EF  ALSV      ++ K++++F +YDL   G+I R E+ ++V A   +  S M + +D    E   DK F + DT +DGK+  EE+       PS+++
Sbjct:   10 PEVLQDLRENTEFTDHELQEWYKGFLKDCPT----GHLTVDEFKKIYANFFPYGDASKFAEHVFRTFDTNGDGTIDFREFIIALSV-TSRGKLEQKLKWAFSMYDLDGNGYISRSEMLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIKGAKSDPSIVR 181          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: Y4781_DICDI (Recoverin family protein DDB_G0274781 OS=Dictyostelium discoideum GN=DDB_G0274781 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.366e-12
Identity = 54/202 (26.73%), Postives = 88/202 (43.56%), Query Frame = -3
Query:  237 LARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT------NKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGM-----------------NLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTF 773
            L   T F   E + LYE+F  +S+   +   +N++ F+  L K       N   S F DR+FDL DT  +  +  +EF   LS+       ++K+E SF+ YD+   G+I + E+ QM       SG                  N S+++ +   D  F   D   DGK+   E++   + HP +   +     +D+  TF
Sbjct:   28 LQESTNFDKVEAKKLYEVFYDLSNGGKEP--LNRDRFKEGLTKLESCGLKNLDNSPFGDRLFDLLDTNKDNTVDLQEFISGLSIL-CKGTAEEKLELSFKAYDIDGNGYITKSELSQMFQQAWI-SGFKALSYQTNEEVNKDDLNNFSEEMAQIFADGAFSSLDVNGDGKLSFNEFKQFAMSHPKITATLN-GSKRDVPITF 224          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: NCAH_DROME (Neurocalcin homolog OS=Drosophila melanogaster GN=Nca PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.366e-12
Identity = 56/173 (32.37%), Postives = 88/173 (50.87%), Query Frame = -3
Query:  279 EILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLAL--FKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA--TLAESGMNLSDD--VIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK 779
            E L + T F+ +EI+  Y+ F K   +    G ++ EEF+     F      S FA+ VF  FD   +G + F EF  ALSV      ++ K++++F +YDL   G+I RQE+ ++V A   +  S M + +D    E   DK F + D   DGK+  EE+       PS+++
Sbjct:   14 EDLKQNTEFTDAEIQEWYKGFLKDCPS----GHLSVEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFLCALSVTS-RGKLEQKLKWAFSMYDLDGNGYISRQEMLEIVTAIYKMVGSVMKMPEDESTPEKRTDKIFRQMDRNKDGKLSLEEFIEGAKSDPSIVR 181          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: KCIP4_BOVIN (Kv channel-interacting protein 4 OS=Bos taurus GN=KCNIP4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.366e-12
Identity = 44/177 (24.86%), Postives = 92/177 (51.98%), Query Frame = -3
Query:  267 EILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGM----NLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTL 779
            E+L  ++ F+  E++ LY  FK    +    G++N++ F+   + F      + +A  +F+ FDT HNG + FE+F + LS+      + +K+ ++F LYD+ + G+I ++E+  ++ A     G      L +D     ++  F++ D   DG +  +E+     +  +++++M L
Sbjct:   74 ELLEAQSKFTKKELQILYRGFKNECPS----GVVNEDTFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSIL-LRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQKDENIMRSMQL 245          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: HPCL1_HUMAN (Hippocalcin-like protein 1 OS=Homo sapiens GN=HPCAL1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.366e-12
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = -3
Query:  279 PEILA---RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA--TLAESGMNLSDD--VIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK 782
            PE+L      T F+  E++  Y+ F K        G +  +EF+   A F      S FA+ VF  FDT  +G + F EF  ALSV      ++ K++++F +YDL   G+I R E+ ++V A   +  S M + +D    E   DK F + DT +DGK+  EE+       PS+++
Sbjct:   10 PEVLQDLRENTEFTDHELQEWYKGFLKDCPT----GHLTVDEFKKIYANFFPYGDASKFAEHVFRTFDTNGDGTIDFREFIIALSV-TSRGKLEQKLKWAFSMYDLDGNGYISRSEMLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVR 181          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: KCIP1_RAT (Kv channel-interacting protein 1 OS=Rattus norvegicus GN=Kcnip1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.331e-12
Identity = 49/180 (27.22%), Postives = 90/180 (50.00%), Query Frame = -3
Query:  267 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMN----LSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTL 788
            E  E L  +T F+  E++ LY  FK    +    G++N+E F+   A F  +   S +A  +F+ FDT   G + FE+F  ALS+      + +K+ ++F LYD+ + G+I ++E+  +V A     G      L +D     +D  F++ D   DG +  +E+        ++++++ L
Sbjct:   48 EGLEQLEAQTNFTKRELQVLYRGFKNECPS----GVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILL-RGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQL 222          
BLAST of CN186342 vs. ExPASy Swiss-Prot
Match: KCIP1_MOUSE (Kv channel-interacting protein 1 OS=Mus musculus GN=Kcnip1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.331e-12
Identity = 49/180 (27.22%), Postives = 90/180 (50.00%), Query Frame = -3
Query:  267 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMN----LSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTL 788
            E  E L  +T F+  E++ LY  FK    +    G++N+E F+   A F  +   S +A  +F+ FDT   G + FE+F  ALS+      + +K+ ++F LYD+ + G+I ++E+  +V A     G      L +D     +D  F++ D   DG +  +E+        ++++++ L
Sbjct:   48 EGLEQLEAQTNFTKRELQVLYRGFKNECPS----GVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILL-RGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQL 222          
The following BLAST results are available for this feature:
BLAST of CN186342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
KCIP2_MOUSE1.046e-1227.78Kv channel-interacting protein 2 OS=Mus musculus G... [more]
HPCL1_SHEEP1.046e-1232.20Hippocalcin-like protein 1 OS=Ovis aries GN=HPCAL1... [more]
HPCL1_PIG1.046e-1232.20Hippocalcin-like protein 1 OS=Sus scrofa GN=HPCAL1... [more]
HPCL1_BOVIN1.046e-1232.20Hippocalcin-like protein 1 OS=Bos taurus GN=HPCAL1... [more]
Y4781_DICDI1.366e-1226.73Recoverin family protein DDB_G0274781 OS=Dictyoste... [more]
NCAH_DROME1.366e-1232.37Neurocalcin homolog OS=Drosophila melanogaster GN=... [more]
KCIP4_BOVIN1.366e-1224.86Kv channel-interacting protein 4 OS=Bos taurus GN=... [more]
HPCL1_HUMAN1.366e-1232.20Hippocalcin-like protein 1 OS=Homo sapiens GN=HPCA... [more]
KCIP1_RAT2.331e-1227.22Kv channel-interacting protein 1 OS=Rattus norvegi... [more]
KCIP1_MOUSE2.331e-1227.22Kv channel-interacting protein 1 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186342 ID=CN186342; Name=CN186342; organism=Citrus sinensis; type=EST; length=904bp
TTTTTAGCGGGTAGAACCATAATTTTTATACTAAATACACAAAAACAAAC
ATCCTCAAAAAAGAAACCAATACCAATACGATGCAGAAGCAACACTCTCC
CATGCCCTTCACAATCATGCACGAGAGAGCCATGTTGTCTATAAATAAAC
AAAACATAAAAATAACAATCTCTCTTGAGCTCTAACCGTTCCCTAGTTTA
GGTATCTTCAACTCTTGAATGGAACACAAAGCTCGGGAACGTTGTTGTGA
TGTCCTTGAGGTACTGGAGGGTCATATTCTTCAAAAGTGATGGATGACGC
AAAACAAGGCTTCTCCACTCTTCCTTGTCGATCTTCCCATCATGTTTTGT
ATCAGCTTCTTCAAAGGTCTTATCAATTATAGTTTCTATAACATCATCCG
AAAGATTCATGCCAGATTCTGCAAGTGTAGCTACCACCATTTGCTTCACC
TCCTGCCTCTCAATAAAACCTTGCTGCTTGAGATCATATAGTTGAAAAGA
GAACTCAATTTTATCATCAATTGGGGCATTTGGATGGAAAACAGAAAGAG
CACGAGCAAACTCTTCAAACCCTAGTATTCCATTGTGCTTTGTATCAAAT
AAGTCAAAAACCCGATCAGCAAACAAGCTCTCTTTTTTGTTTGTCTTGAA
TAATGCTAACTGGAACTCTTCCTTGTTAATTAGACCGTCATCAATCACAG
CACTGCTAATCTTCTTAAAGAGCTCATACAGTGCCTCGATTTCACTTACA
CTAAAAACTGTCTCTCTCGCAAGTATTTCAGGATCTTCGAGGCCCCTAGA
CGGATTTGTATCACAACACTGCAATAGGGAAGCAAATAAATGCTTAAATC
CCTCTATGCACTGCAACATGATAGTCTCTGCACATCAAAACACTCCATAC
CTTT
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