CN186340

Overview
NameCN186340
Unique NameCN186340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3716 contig Csv1_Contig3716:210..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186340 vs. ExPASy Swiss-Prot
Match: UGPA_MOUSE (UTP--glucose-1-phosphate uridylyltransferase OS=Mus musculus GN=Ugp2 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.947e-36
Identity = 79/193 (40.93%), Postives = 111/193 (57.51%), Query Frame = 1
Query:  121 SENEKNGFINLVARYLSGEAQHVEWSKIQTPTDEIVVPYDSLAPVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLP---CKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ 690
            ++ + +GF  L  R+L  +   V+W KIQ P ++ + PY+ +      P                      MGC GPKS+I VRN  TFLDL V QIE+LN  Y  +VPL+LMNSFNT +DT KI++KY+   V+I+TFNQS+YPR+  +  +P+         + + WYPPGHGD++ S  NSG LD  I +
Sbjct:   51 TKKDLDGFRKLFHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIK-ARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPIAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIEE 242          
BLAST of CN186340 vs. ExPASy Swiss-Prot
Match: UGPA_CRIGR (UTP--glucose-1-phosphate uridylyltransferase OS=Cricetulus griseus GN=UGP2 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.947e-36
Identity = 80/204 (39.22%), Postives = 115/204 (56.37%), Query Frame = 1
Query:   88 LKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDEIVVPYDSLAPVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLP---CKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ 690
            L +A +   + ++ + +GF  L  R+L  +   V+W KIQ P ++ + PY+ +      P                      MGC GPKS+I VRN  TFLDL V QIE+LN  Y  +VPL+LMNSFNT +DT KI++KY+   V+I+TFNQS+YPR+  +  +P+           + WYPPGHGD++ S  NSG LD  + +
Sbjct:   40 LTTATSHEYEHTKKDLDGFRKLYHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIK-ARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKSYNTDVPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPVAKDVSSSGESTEAWYPPGHGDIYASFYNSGLLDTFLEE 242          
BLAST of CN186340 vs. ExPASy Swiss-Prot
Match: UGPA_PIG (UTP--glucose-1-phosphate uridylyltransferase OS=Sus scrofa GN=UGP2 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.542e-36
Identity = 79/193 (40.93%), Postives = 111/193 (57.51%), Query Frame = 1
Query:  121 SENEKNGFINLVARYLSGEAQHVEWSKIQTPTDEIVVPYDSLAPVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLP---CKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ 690
            ++ + +GF  L  R+L  +   V+W KIQ P ++ + PY+ +      P                      MGC GPKS+I VRN  TFLDL V QIE+LN  Y  +VPL+LMNSFNT +DT KI++KY+   V+I+TFNQS+YPR+  +  +P+         + + WYPPGHGD++ S  NSG LD  I +
Sbjct:   51 TKKDLDGFRKLFHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIK-ARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGE 242          
BLAST of CN186340 vs. ExPASy Swiss-Prot
Match: UGPA_HUMAN (UTP--glucose-1-phosphate uridylyltransferase OS=Homo sapiens GN=UGP2 PE=1 SV=5)

HSP 1 Score: 152.14 bits (383), Expect = 2.542e-36
Identity = 79/193 (40.93%), Postives = 111/193 (57.51%), Query Frame = 1
Query:  121 SENEKNGFINLVARYLSGEAQHVEWSKIQTPTDEIVVPYDSLAPVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLP---CKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ 690
            ++ + +GF  L  R+L  +   V+W KIQ P ++ + PY+ +      P                      MGC GPKS+I VRN  TFLDL V QIE+LN  Y  +VPL+LMNSFNT +DT KI++KY+   V+I+TFNQS+YPR+  +  +P+         + + WYPPGHGD++ S  NSG LD  I +
Sbjct:   51 TKKDLDGFRKLFHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIK-ARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGE 242          
BLAST of CN186340 vs. ExPASy Swiss-Prot
Match: UGPA_BOVIN (UTP--glucose-1-phosphate uridylyltransferase OS=Bos taurus GN=UGP2 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.320e-36
Identity = 79/195 (40.51%), Postives = 115/195 (58.97%), Query Frame = 1
Query:  121 SENEKNGFINLVARYLSGEAQHVEWSKIQTPTDEIVVPYDSLAP--VPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLP---CKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ 690
            ++ + +GF  L  R+L  +   V+W KIQ P ++ + PY+ +    +P++ +                     MGC GPKS+I VRN  TFLDL V QIE+LN  Y  +VPL+LMNSFNT +DT KI++KY+   V+I+TFNQS+YPR+  +  +P+         + + WYPPGHGD++ S  NSG LD  I +
Sbjct:   51 TKKDLDGFRKLFHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIKARGLPDNVSSVLNKLVVVKLNGGLGTS---MGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYDTDVPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPVAKNVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGE 242          
BLAST of CN186340 vs. ExPASy Swiss-Prot
Match: UGPA1_ENCCU (UTP--glucose-1-phosphate uridylyltransferase OS=Encephalitozoon cuniculi GN=UGP1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.556e-30
Identity = 83/218 (38.07%), Postives = 116/218 (53.21%), Query Frame = 1
Query:   40 LDRINHMATDAEKLTQLKSAVAGLNQISENEKN--GFINLVARYLSGEAQHVEWSKIQTPTDEIVVPYDSLAPVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPL-PCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALI 684
            LD  +   T  + L ++K  + GL +   N  N   F  L  RYL    + + W KI++P D IV        +PE   +                    MGC GPKS I +++G  F+DL+V QI  LN+KY  +VPL+LMNSFNT   T KII +Y      I  F+QS++PR+ ++  +P+ P  G  DK G YPPGHGD+F S+ NSG L+ L+
Sbjct:   23 LDEFDDKCT-CKLLKEMKETLEGLKKSHPNPTNLDEFYRLFERYLRTRHEKIVWEKIRSPKDRIV----QYNEIPEPTEKSKELLRKLAILKLNGGLGTTMGCVGPKSAITIKDGKNFIDLVVKQIRYLNSKYKIDVPLILMNSFNTEGMTDKIIFRYD----GIKKFSQSKFPRISSETLLPVSPSHG--DK-GMYPPGHGDLFYSMKNSGMLEELL 228          
BLAST of CN186340 vs. ExPASy Swiss-Prot
Match: UGPA2_SCHPO (Probable UTP--glucose-1-phosphate uridylyltransferase OS=Schizosaccharomyces pombe GN=SPCC794.10 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.346e-28
Identity = 54/119 (45.38%), Postives = 86/119 (72.27%), Query Frame = 1
Query:  334 MGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ 690
            +G   PK++IEVR+  +FLDL + QIE LN +Y  +VP +LMNS++T+D+T K++ KY+   ++I TF QS+YPR+  D  +P+P    +  + WYPPGHGD+F +L++SG ++ L++Q
Sbjct:  116 LGVNYPKAMIEVRDNQSFLDLSIRQIEYLNRRYDVSVPFILMNSYDTNDETCKVLRKYAGCKIDISTFEQSRYPRVFVDSQLPVPKAAPSPIEEWYPPGHGDIFDALVHSGTIERLLAQ 234          
BLAST of CN186340 vs. ExPASy Swiss-Prot
Match: UGPA1_DICDI (UTP--glucose-1-phosphate uridylyltransferase 1 OS=Dictyostelium discoideum GN=uppA PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.063e-26
Identity = 68/179 (37.99%), Postives = 94/179 (52.51%), Query Frame = 1
Query:  181 QHVEWSKIQTPTDEIVVP-------YDSLAPV-PEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCAD--DFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS 687
            +H   +K Q  TDEI +P       Y  L  V P D +                     MGC   KS +E+  G+TFLD+ V  IE +N  Y  +VPL++MNS+ TH++T+K+IEKY    V I TF QS +P++  D  + VP P      K+ WYPPG GD+F SL  SG +D  ++
Sbjct:   75 RHAYINKDQIYTDEIKIPNKTEMVDYHQLHLVSPIDQSNASRLLNKLVVIKLNGGLGNSMGCKTAKSTMEIAPGVTFLDMAVAHIEQINQDYNVDVPLVIMNSYKTHNETNKVIEKYKTHKVSIKTFQQSMFPKMYKDTLNLVPKPNTPMNPKE-WYPPGSGDIFRSLQRSGLIDEFLA 252          
BLAST of CN186340 vs. ExPASy Swiss-Prot
Match: UGPA2_YEAST (Probable UTP--glucose-1-phosphate uridylyltransferase OS=Saccharomyces cerevisiae GN=YHL012W PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = 1
Query:  358 VIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK-YSKSNVEIHTFNQSQYPRLCADDFVPLPCK-GKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ 690
            + EV+NG++ LD+IV Q +NLN +Y  +VPL+ M S  T    S  +E+ YS S V   T  QS +P++  D  +P+  +    + D WYP G G++  +L  SG+LD LI+Q
Sbjct:  119 LFEVKNGMSSLDVIVRQTQNLNVRYNSDVPLIFMTSLETESQVSNFLEEHYSSSKVRWKTVVQSSFPQIDKDRLLPIDLQINSHENDFWYPCGTGNLTDTLYFSGELDKLIAQ 231          
The following BLAST results are available for this feature:
BLAST of CN186340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
UGPA_MOUSE1.947e-3640.93UTP--glucose-1-phosphate uridylyltransferase OS=Mu... [more]
UGPA_CRIGR1.947e-3639.22UTP--glucose-1-phosphate uridylyltransferase OS=Cr... [more]
UGPA_PIG2.542e-3640.93UTP--glucose-1-phosphate uridylyltransferase OS=Su... [more]
UGPA_HUMAN2.542e-3640.93UTP--glucose-1-phosphate uridylyltransferase OS=Ho... [more]
UGPA_BOVIN3.320e-3640.51UTP--glucose-1-phosphate uridylyltransferase OS=Bo... [more]
UGPA1_ENCCU3.556e-3038.07UTP--glucose-1-phosphate uridylyltransferase OS=En... [more]
UGPA2_SCHPO4.346e-2845.38Probable UTP--glucose-1-phosphate uridylyltransfer... [more]
UGPA1_DICDI9.063e-2637.99UTP--glucose-1-phosphate uridylyltransferase 1 OS=... [more]
UGPA2_YEAST6.510e-1639.82Probable UTP--glucose-1-phosphate uridylyltransfer... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002L24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002L24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186340 ID=CN186340; Name=CN186340; organism=Citrus sinensis; type=EST; length=692bp
GCAGTATAACGTCTGTTCTTCTAGATTCATCTTCCTCGTTTAGACCGAAT
CAATCACATGGCCACTGACGCCGAGAAGCTCACTCAGCTCAAATCTGCCG
TTGCTGGCCTCAATCAAATCAGTGAAAATGAGAAAAATGGATTCATCAAC
CTCGTTGCTCGCTATCTAAGCGGCGAAGCGCAACACGTGGAATGGAGCAA
AATCCAAACGCCTACTGATGAAATCGTAGTTCCTTATGACAGCTTGGCAC
CAGTTCCTGAAGATCCAGCGGAAACCAAAAAGCTTTTGGATAAGCTTGTC
GTGTTGAAGCTCAATGGAGGTTTGGGAACCACAATGGGCTGCACTGGTCC
CAAGTCTGTTATTGAAGTTCGTAACGGGTTGACATTTCTTGACCTCATCG
TCATCCAGATTGAGAATCTCAATGCTAAATATGGATGTAATGTTCCCCTG
CTACTCATGAACTCGTTCAACACGCATGATGATACATCGAAGATTATAGA
GAAGTACTCCAAATCAAATGTCGAGATTCATACTTTTAACCAGAGCCAGT
ATCCTCGATTGTGTGCCGATGATTTTGTGCCCTTACCATGCAAAGGGAAG
ACTGACAAGGATGGATGGTATCCTCCTGGCCACGGTGATGTCTTCCCATC
CTTAATGAACAGCGGCAAGCTTGACGCTTTAATTTCTCAGGG
back to top