CN186335

Overview
NameCN186335
Unique NameCN186335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length409
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186335 vs. ExPASy Swiss-Prot
Match: RL27A_DROME (60S ribosomal protein L27a OS=Drosophila melanogaster GN=RpL27A PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.466e-14
Identity = 42/85 (49.41%), Postives = 61/85 (71.76%), Query Frame = -1
Query:  161 RNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 406
            ++KF  P +N+DKLWS+V  +  A+  K+     P+ID+ +FGY+K+LG+G LP  +PV+VKAK  SK AE KIK+AGG  +L+A
Sbjct:   67 QHKFR-PEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPA-RPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149          
BLAST of CN186335 vs. ExPASy Swiss-Prot
Match: RL28B_SCHPO (60S ribosomal protein L28-B OS=Schizosaccharomyces pombe GN=rpl28b PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.265e-14
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  161 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 409
            ++N    P VN+D+LW++VP + + K    N    P+I+V Q GY KVLGKG LP+  PV+++ + VS+ AE+KIK+AGG V L A
Sbjct:   64 MKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDT-PVIIQTRYVSRRAEEKIKQAGGVVELIA 148          
BLAST of CN186335 vs. ExPASy Swiss-Prot
Match: RL28A_SCHPO (60S ribosomal protein L28-A OS=Schizosaccharomyces pombe GN=rpl28a PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 3.265e-14
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  161 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 409
            ++N    P VN+D+LW+++P + + K    N    P+I+V Q GY KVLGKG LPE  PV+V+ + VS+ AE+KIK+AGG V L A
Sbjct:   64 MKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPET-PVIVQTRYVSRRAEEKIKQAGGVVELIA 148          
BLAST of CN186335 vs. ExPASy Swiss-Prot
Match: RL27A_ERYGR (60S ribosomal protein L27a OS=Erysiphe graminis subsp. hordei PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.570e-14
Identity = 39/85 (45.88%), Postives = 58/85 (68.24%), Query Frame = -1
Query:  161 NKFHCPIVNIDKLWSMVPQDVK----AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 403
            N F  P++N++KLWS++P + +    +  + D +P+ID+   GY KVLGKG +P+  P+VV+A+  SK AE+KI EAGG V L A
Sbjct:   66 NHFWKPVLNLEKLWSLIPAEKREAYLSSTNPDVIPVIDLLPLGYSKVLGKGRIPK-VPLVVRARWFSKEAERKITEAGGVVELVA 149          
BLAST of CN186335 vs. ExPASy Swiss-Prot
Match: RL27A_TRYBB (60S ribosomal protein L27a OS=Trypanosoma brucei brucei GN=RPL27A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = -1
Query:  161 PIVNIDKLWSMVPQDVKAKASKDNV-PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 388
            P +N+D L  ++ +D   KA K  V P+ID+   GY K+LG G L    P +VKA+ VSK A+KKI++AGGAVVL A
Sbjct:   71 PTINLDNLTKLMAKDEAMKAKKGEVLPVIDLLANGYSKLLGNGHL--QAPCIVKARWVSKLADKKIRKAGGAVVLQA 145          
The following BLAST results are available for this feature:
BLAST of CN186335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27A_DROME1.466e-1449.4160S ribosomal protein L27a OS=Drosophila melanogas... [more]
RL28B_SCHPO3.265e-1446.5160S ribosomal protein L28-B OS=Schizosaccharomyces... [more]
RL28A_SCHPO3.265e-1447.6760S ribosomal protein L28-A OS=Schizosaccharomyces... [more]
RL27A_ERYGR5.570e-1445.8860S ribosomal protein L27a OS=Erysiphe graminis su... [more]
RL27A_TRYBB4.413e-1149.3560S ribosomal protein L27a OS=Trypanosoma brucei b... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002L21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186335 ID=CN186335; Name=CN186335; organism=Citrus sinensis; type=EST; length=409bp
TTTTTTTTTTTCAATAAAATGAGATTCAGGTCACATTTAATCATTAAGCG
AGCCATATACCCAAAAAAAAAGATAAAAACATTGTGATTTAAATAAGTCT
CAACAGATCCCAGAATAAAACAAAATCCCTAGACAAGGGAGAGTTACCAA
AATAACCCTAAGCTGTGAGCACAACAGCGCCACCAGCCTCTTTGATCTTC
TTCTCAGCGGTCTTAGAAACGAGCTTGGCCTTGACAACGACGGGCTGGTT
CTCCGGCAAAACACCTTTGCCCAAAACCTTAAAGTAGCCGAACTGAGTGA
CATCAATCATCGGAACATTGTCCTTGCTGGCCTTTGCTTTCACATCTTGT
GGGACCATGGACCAGAGCTTGTCGATGTTGACGATGGGGCAGTGGAATTT
GTTGCGGAG
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