CN186320

Overview
NameCN186320
Unique NameCN186320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186320 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = -3
Query:  525 IFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 722
            +F G CGTSL+H VTA+GY    G D  I    WG+ WGE GYIRM R+V+ + +G CGIA++  Y
Sbjct:  147 VFNGPCGTSLNHAVTAIGY----GQDSIIYPKKWGAKWGEAGYIRMARDVSSS-SGICGIAIDPLY 207          
BLAST of CN186320 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = -3
Query:  525 CGTSLD---HGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 707
            CGT+ D   H V AVGYG ENG  YW++KNSWG+ WG+ GY +ME          C IA  ASY
Sbjct:  299 CGTTPDDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMG-----KNMCAIATCASY 357          
BLAST of CN186320 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 33/57 (57.89%), Postives = 36/57 (63.16%), Query Frame = -3
Query:  525 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 695
            LDHGV  VGYG E G  YWIVKNSWG  WG+ GYI M ++        CGIA  ASY
Sbjct:  163 LDHGVLVVGYGFEGGKKYWIVKNSWGEKWGDKGYIYMAKD----RKNHCGIATAASY 215          
BLAST of CN186320 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = -3
Query:  525 CGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 707
            CGT+   ++H V AVGYG E+G  YW++KNSWG+ WG+ GY +ME          CG+A  ASY
Sbjct:  298 CGTTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDEGYFKMEMG-----KNMCGVATCASY 356          
BLAST of CN186320 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = -3
Query:  525 IFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 722
            IF G CG  +DH V AVGYG     +Y ++KNSWG+ WGE GYIR++R   G   G CG+   + Y
Sbjct:  281 IFVGPCGNKVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRG-TGNSYGVCGLYTSSFY 341          
BLAST of CN186320 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = -3
Query:  525 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 695
            ++H V AVGYG +NG  YWIVKNSWGS WGE GY  +ER         CG+A  ASY
Sbjct:  277 VNHAVLAVGYGEQNGLLYWIVKNSWGSQWGENGYFLIERG-----KNMCGLAACASY 328          
BLAST of CN186320 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = -3
Query:  543 IFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGI 722
            I+ G CGT+ DH VTAVGYG      Y ++KNSWG +WGE GYIR++R  +G   G CG+
Sbjct:  148 IYEGPCGTNTDHAVTAVGYGKT----YLLLKNSWGPNWGEKGYIRIKR-ASGRSKGTCGV 202          
BLAST of CN186320 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = -3
Query:  525 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 707
            C  +++HGV  VGYG  +G DYW+VKNSWG  +G+ GYIRM RN        CGIA   SY
Sbjct:  272 CTQNVNHGVLVVGYGNLDGKDYWLVKNSWGLHFGDQGYIRMARNSG----NHCGIANYPSY 328          
BLAST of CN186320 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = -3
Query:  525 CGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 707
            CG++   ++H V AVGYG E+G  YW++KNSWG+ WG+ GY +ME          CGIA  ASY
Sbjct:  296 CGSTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDKGYFKMEMG-----KNMCGIATCASY 354          
BLAST of CN186320 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = -3
Query:  573 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNV 695
            L+H V  VGYGTE G  YW +KNSWGS WGE GY R++RN+
Sbjct:  281 LNHAVLLVGYGTEGGVSYWTLKNSWGSDWGEDGYFRVKRNI 321          
The following BLAST results are available for this feature:
BLAST of CN186320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
BROM2_ANACO7.988e-1251.52Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
ALEU_HORVU7.988e-1251.56Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CATL1_CHICK1.043e-1157.89Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CYSP2_MAIZE1.780e-1148.44Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
PAPA1_CARPA3.035e-1148.48Papain OS=Carica papaya PE=1 SV=1[more]
CATH_MOUSE3.035e-1156.14Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
MEX1_JACME3.964e-1153.33Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATS_BOVIN3.964e-1152.46Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
ALEU_ARATH3.964e-1148.44Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
CATV_NPVAH8.832e-1163.41Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002L13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186320 ID=CN186320; Name=CN186320; organism=Citrus sinensis; type=EST; length=724bp
TTTTTTACAAAACCAACGTCCGAATAAATATTTAACAGACCATCCACCTG
CCGGTACATTAACGTTTGAAATGAAATGCAGTAAAATGAACTAAGGCCGG
GGAGAAACTCATTCACAAGCACGAATATCTTCATCCTCCCTTCGGCCTTC
CACTGCTCTTACAGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTG
ATTTCCATGAGCCCAGTAAGGTTTAGCAGGGGTGCGTCGCAATGCCCTCA
CTCCCAATGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTA
CAGATGGGATAGTCATGTGGGCAGCAGCTATAGTGGTCATCACAGCAGGT
GGCAGCCTCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACT
CAAAGACACAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCA
CACACAGCAGGAGGCTTTGTTGGAGATGGAGGAGACGGTCCGGGGTTGGG
AGGATTTTGGCCTTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCAC
ACTTGCCCGTGAGAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCA
CCCTCTCCCCAGCTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGC
TCCATTTTCTGTGCCATATCCAACAGCAGTAACACCATGGTCCAGAGATG
TCCCACATCTTCCCGTAAATATAC
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