CN186311

Overview
NameCN186311
Unique NameCN186311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN186311 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 54/172 (31.40%), Postives = 84/172 (48.84%), Query Frame = -3 
Query:  260 FLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPD---KGTQLTCPGKPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENE-AKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDAR-PHVSAWAADITSRPAWAKVLALLK 760
            FL +NP G+VPVLE  +  +FES AI +Y+++   D    G+ L       A +  W +  +L+    +S L W   + P  G     A  EE   + L + LD     L+ + YL   S TL D+  + N+NL   T + K F +  PHV  +   + ++P + KVL  +K
Sbjct:   45 FLKMNPIGKVPVLETPEGSVFESNAIARYVSRLNGDNSLNGSSLI----EYAQIEQWIDFSSLEI--YASILRW---FGPRMGFMPYSAPAEEGAISTLKRALDALNTHLTSNTYLVGHSITLADIITVCNLNLGFATVMTKKFTSEFPHVERYFWTVVNQPNFTKVLGDVK 207
The following BLAST results are available for this feature:
BLAST of CN186311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
EF1G1_ARATH1.963e-1131.40Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002L08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186311 ID=CN186311; Name=CN186311; organism=Citrus sinensis; type=EST; length=762bp
TATCTCCGCTTCGTTTATTAGGGTACATAGATAAAATCAATACTCAAGCC
ATCAACATCAAAGTTGAATATGAGGCAGCGCTGTTGAAATACAAAAGCGG
TAGTACAAACTACAAAGCATCAATATTCTGCAGAATATTGATGACAAACG
CCAAACAAGAGAATACGAACTCGAAAACCAGCCTAATAGGTATTACAAAA
GATAAGTGACCACCGAGGAGCGACTAACGTCTAGTAGGTAGCGGGCAGAG
TGTTCAGTGTTTGAGCAAGGCAAGGACCTTAGCCCAAGCCGGTCTGGAAG
TGATATCAGCTGCCCATGCGCTAACATGGGGGCGTGCATCAAACAGCTTC
TTGACAGGCGTCCCCAACAACAAATTAATATTGGGGAGATGATGCAAATC
GACCAAGGTGAAGCTGTCGCACGCCAAGTATTTGGACTGAGACAAACGGG
CCTCGTAAACATCTAAAATTTTGGCAAGCTTAGCTTCATTTTCTTCAACC
GCAGCTGGATCAGTGGTCATTCCAAACATTGGCTTGTACACGAGCTCCCA
GTTGAGCTTCGATGATGGGGGGTCGAACTGGAGTGCCTCCACCTCCTTCC
ATACCAATAACGGGGCGATGGGCTTGCCTGGGCATGTTAACTGGGTGCCT
TTGTCTGGAAACTCCTGGGCGATGTATTGGGTGATTGCCCTTGATTCGAA
GAGCTTCTGGTCGCCGTGTTCAAGCACCGGAACTTGACCGAATGGATTCA
AAGAAAGGAAGG
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